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Traceback (most recent call last):
File "e:/python_project/WSI/clam/pathML_preprocess/stain_deconvolution_color_ormalization.py", line 9, in
from pathml.core import HESlide
File "E:\anacon…
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Thanks for this interesting method.
I have started following the pathml-tutorial datasets. While running the sample code, I am getting following error :
FileNotFoundError: [Errno 2] No such fi…
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Hello,
I am trying to replicate the first steps of the tutorial but I run into an error really early on.
I installed pathml following the directives, launch Spyder on the pathml environment and se…
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I think this is related to #211, but the error message is different on gpu. There are two types of error, both shown below:
# 1
```
distributed.nanny - WARNING - Worker exceeded 95% memory budget…
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1. the default kernel created in the docker version should be named pathml or pathmldocker
2. it would be GREAT to have a splash page with Welcome and examples. This is what it looks like now
![…
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Dear author,
Thank you for reading my request. I wonder to know that whether the pathml supports ".TMAP" formatted WSI file? The ".TMAP" might be produced by a company called Unic Technologies (htt…
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A new version of openslide was recently released with some improvements, notably support for DICOM. Maybe pathml support for DICOM could be moved to use openslide instead of the backend we currently h…
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I have encountered some difficulties while attempting to use the Pathml package via both Colab and Docker. I am unable to run my script or use my own file to execute the script successfully. I would a…
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For some operations, e.g. tissue detection HE, we may want to run at lower resolution to speed up computation relative to running on each tile at full-resolution. What is the best way to fit this into…
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Hi,
I wanted to create a new issue to hear your opinions on my reply to #218, which was closed.
I was able to parallelize running an empty pipeline, which I understand should not befit from das…