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Hi, I am using part of your `topology.py` script to calculate the persistent homology dimension for the embeddings of a protein language model (ESM-2) and the dimension estimate show low error but see…
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Were you able to dig up examples for this?
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> The ``boundary_matrix`` class takes a "Representation" class as a parameter.
> This representation defines how columns of the matrix are represented and how
> low-level operations (e.g., column ad…
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As stated in the roadmap, currently, `guddhi` and `giotto-ph` are used for various purposes. We want to be able to allow the user to specify which backend to use, and also provide sane defaults if the…
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Continue with the image analysis pipeline, explore more the CNN model that was used, implement different dimensionality reduction algorithms and clustering methods. Also explore the possibility of per…
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Hi!
I wanted to use your library while building an adaptation of [TOGL](https://github.com/BorgwardtLab/TOGL). I installed it with pip and everything checked out, but now that I try to import it:
…
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Dear Admin
Is it possible to run persistent homology (PH) just for a specific dimension say k=3 or k=5?
Currently, Javaplex runs PH from 0 to k, is it possible to just run one dimension?
The re…
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Can use cluster persistence (https://arxiv.org/pdf/1811.00102.pdf), or persistent homology
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hi, Dr Hu. Recently, I have been tried to run your Topoloss.py in my own network.
The shape of input tensor is [4, 2, 512, 512], and the shape of label tensor is [4, 512, 512]. I want to traverse…
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A Topological Machine Learning Pipeline for Classification
https://www.mdpi.com/2227-7390/10/17/3086
パーシステント
https://bastian.rieck.me/outreach/ECML_PKDD_2020_Lecture_3.pdf
Instability of the B…