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[SIGNOR2GO-CAM.pptx](https://github.com/geneontology/signor2gocam/files/4827431/SIGNOR2GO-CAM.pptx)
Implement the patterns as described in attached PPTX:
1. Direct interactions
2. Indirect or uns…
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http://kipoi.org/
> Kipoi (pronounce: kípi; from the Greek κήποι: gardens) is an API and a repository of ready-to-use trained models for regulatory genomics. It currently contains 1709 different mo…
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I think you should try to account for gene characteristics. For example, longer genes might be expected to harbor more SNPs. These genes might also be the ones harboring more motifs for post-transcrip…
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We have annotations made to terms specifically listing oscar mRNA - the target mRNA can be handled as has_input and we should review these annotations to make sure that the regulation is direct.
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**Description of the issue**
As per the message left by Jason [on slack](https://humancellatlas.slack.com/archives/CACM2JCMS/p1697485256722649?thread_ts=1697485243.091859&cid=CACM2JCMS), there are a …
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> Advanced machine learning models applied to large-scale genomics datasets hold the promise to be major drivers for genome science. Once trained, such models can serve as a tool to probe the relation…
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### Topic model (NLP)
### CNN for TF binding prediction
1. [2018-Nucleic Acids Research-DeFine: deep convolutional neural networks accurately quantify intensities of transcription factor-DNA bindi…
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I find that bib2df does not correctly parse when field names are "title", "author" etc. Has anyone else faced this problem?
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see GO ticket go-ontology/issues/23135
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We need to pull a series of data to inform which genes to look for variants in.
There is a[ google doc here](https://docs.google.com/spreadsheets/d/1yX-5sfrC3vrahf4_k7-5rl4Oqzm853ollIMmUo1PTc0/edit…