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Hi Vadim and community. I am playing around with the filtering the main report values. As part of this, I have been trying to reproduce the pg_matrix values I observe. When reproducing your filters as…
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The current manuscript has a couple of goals:
- [ ] Provides statistics about computational proteomics software usability through citations, poll and PRIDE data.
- [ ] Discuss major challenges…
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# Abstract
Cytoscape is an open-source software to visualize and analyze biological networks. Developers can add new features to Cytoscape by developing their own Java-based apps by utilizing the C…
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This issue is to provide a shared space (a bit more structure than slack) for all the members of the community working on tidy adapters/analysis frameworks for proteomics/metabolomics/mass spectroscop…
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**Addition of Algorithm:**
My name is Matthew Marino. I am a CFDE GlyGEN summer intern working under Jeet Vora and Rene Ranzinger. I am currently trying to create multiomics workflows starting with…
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## User story
>As a submitting author
>I want to see the guidelines for what to submit as part of my proteomics dataset
>So that I can include all the required data and details
## Acceptan…
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I recently began using the Linux platform for work. I considered using our server, which is running Ubuntu 22.04.4 LTS, to run DIA-NN.
_I installed .deb version._ I converted .wiff to .mzml and kept …
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Hi folks:
I don't know if this is the place to discuss the integration of both initiatives. From our talk today, I
would like to promote the following steps:
- [ ] Integrate the PhenoMeNal Reg…
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# Abstract
Proteomics is a broad research field embracing a wide range of alternative experimental and computational approaches. This led to the development of a zoo of single- and multi-purpos…
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In this session, we would like to identify and discuss challenges and opportunities in mass spectrometry (MS)-based omics (proteomics and metabolomics) within the Bioconductor project. These topics co…