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Error in file(filename, "r", encoding = encoding) :
cannot open the connection
The ssgsea_gui.R is saved in the same directory as my .GCT file and GMT file. Does this read file command need to …
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### Title
Proteomics Identification Ontology
### Short Description
The Proteomics Identification Ontology (PRIDE ontology) provides a model for describing, sharing and integrating of proteom…
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Hello,
I'm encountering an issue when trying to convert a Bruker file using the Timsconvert Docker version. The process starts, but no output is generated.
### Steps to Reproduce:
1. I run the …
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Dear Team,
MLE is one of the imputation options, which calls the `em.norm` and `imp.norm `functions from the `norm` package. And implemented by Margin ==2 .
I think Margin ==2 is a reasonable …
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Dear Developer,
Can the PIMMS package be used to impute missing values in proteomics datasets processed with MaxQuant, particularly for post-translational modifications? If so, are there specific r…
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When attempting to reproduce the results, I encountered an issue at the integration step.
combined %
as.data.frame() %>%
rownames_to_column(var = "Modified.Sequence") %>%
pivot_longer(-`…
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Currently the representation of the pyrenoid (a structure found in
eukaryotic algae and moss for boosting efficiency of rubisco) is
incomplete and there is no strategy for population with gene produ…
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Hello,
I have a local build with an enhancement working fine under Windows 11 using Visual Studio 2022.
Now I wish to target Linux Red Hat 8 for production.
When trying to build Quameter the follow…
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For example, [Label-free Analysis of CD8+ T Cell Subset Proteomes Supports a Progressive Differentiation Model of Human-Virus-Specific T Cells](
https://www.ncbi.nlm.nih.gov/pubmed/28467900) (2017) p…
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