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We need to use DIA-NN to process our lactylation proteomics data, however we didn't find anywhere to input these parameter(lactylation modification or 72.021 Da Delta mass). So our project have to bee…
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Hello,
I am trying to use xCell with Proteomics data, before using it I normalized and imputed the data. I also checked the number of genes, the tool requires minimum 5000 genes, my file contains …
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We need enzyme data for the BMCA workflow. `EFlux2` implements rules to deal with multiple genes dictating a reaction.
Take the upper bounds assigned by `EFlux2` and create a dataset using these up…
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When I run the cell with the code "manager.reduce_scope()" in the column_and_value_mapping notebook from the examples, I get the following error. I can see the histogram and table printed but then th…
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For example, [Label-free Analysis of CD8+ T Cell Subset Proteomes Supports a Progressive Differentiation Model of Human-Virus-Specific T Cells](
https://www.ncbi.nlm.nih.gov/pubmed/28467900) (2017) p…
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Hi Vadim and community. I am playing around with the filtering the main report values. As part of this, I have been trying to reproduce the pg_matrix values I observe. When reproducing your filters as…
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**Description:**
My name is Matthew Marino. I am a CFDE GlyGEN summer intern working under Jeet Vora and Rene Ranzinger. I am currently trying to create multiomics workflows starting with transcripto…
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Hi.
I have data from a spatial proteomics experiment in the format shown below, which just contains x-y co-ordinates, intensity and mz values.
I would like to read this into an SPE object. How cou…
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**Addition of Algorithm:**
My name is Matthew Marino. I am a CFDE GlyGEN summer intern working under Jeet Vora and Rene Ranzinger. I am currently trying to create multiomics workflows starting with…