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Currently, the QC filtering (`filter_qc_flags`) does not remove any sondes. [This commit](https://github.com/atmdrops/pydropsonde/commit/40c6b5aa5fc3c1e88bf3913552502c298894fa98) is the culprit! The d…
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Hello, I would like to study the genetic correlations of several diseases in East Asians, and below is the log file. I am wondering why so many SNPs are being excluded due to valid alleles QC. Could y…
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GTAC Web Tools App for analyzing and visualizing QC stats
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### Family name
Nova QC
### Family URL
https://royaleapi.com/clan/family/nova-qc/clans
### Family configuration
```yaml
name: Nova QC
key: nova-qc
color: blue
emblem: Star_Shine_02
…
niibz updated
3 weeks ago
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I'm trying to alter the "mixed sites" qc rating, but I'm having trouble figuring out how.
The pathogen.json file and the documentation on Github (both pictured below) only mention a threshold of 1…
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Hi, I'm trying to run the new SCENIC+ using this tutorial:
https://pycistopic.readthedocs.io/en/latest/notebooks/human_cerebellum.html
When I get to the QC steps after inferring consensus peaks, …
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I suggest to add the QC flag(s) to study index after GWAS QC.
A bit unclear how it interferes with other steps in GWAS catalog processing tho.
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The current example analysis has the processing steps of OPS separate from the evaluation steps. For example, in [sbs_1](https://github.com/cheeseman-lab/OpticalPooledScreens/tree/main/example_analysi…
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QC of all datasets generated by Robel