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Wrap QuPath in Galaxy Tools.
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### Description of feature
# Description
https://qupath.github.io/
https://www.10xgenomics.com/support/software/xenium-explorer/latest/tutorials/xe-image-file-conversion
Can we implement this?
heylf updated
2 months ago
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Hi!
I've recently downloaded the most recent version of the qupath cellpose extension and run into an issue I am not able to solve. When I try to run the "detection script template" or "detect nuclei…
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Mainly between full res image pixels and microns. Say the data was originally read as pixels, and the annotations from QuPath are in pixels, but we want to convert to microns later.
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## IMPORTANT!
This section is **only** for bug reports, which **must** follow the template below.
Please post any other questions to the official QuPath forum at https://forum.image.sc/tags/qupa…
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after https://github.com/qupath/qupath/pull/1489 and https://github.com/qupath/qupath/pull/1579 have been merged upstream, it would be beneficial to adapt the extension to never call `getServer()` whe…
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### Metadata
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This section: https://qupath.readthedocs.io/en/0.5/docs/deep/gpu.html#creating-a-launcher-for-qupath-pytorch
This line: There are some extra PyTorch options with DJL. There are more details in the …
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Use the wordcloud python library to generate a word cloud from this (source: Modified from I2K Program):
```
BioImage-Analysis Code Generation
Introduction to CellProfiler: A beginner’s guide to …
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Generate artificial pyramid using https://github.com/ome/bioformats/blob/develop/components/formats-gpl/utils/WritePyramid.java and:
```
$ java WritePyramid "0&sizeX=23073&sizeY=36336.fake" "1&siz…