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**Topic name:** ribosome profiling
**Short description:** With ribosome profiling, ribosome-protected mRNA fragments are analyzed with RNA-seq techniques leading to a genome-wide measurement of th…
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Hi,
I got a ModuleNotFoundError when testing the RiboCode installation with `RiboCode_onestep -V`
Can you help?
```
$ RiboCode_onestep -V
Traceback (most recent call last):
File "/nexus/posi…
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Hello,
I have ribosome profiling data from two conditions: treatment and control. For both treatment and control I have 3 RNA-seq libraries (quantified by MMSEQ) of the ribosome RNA footprints and …
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Add the Kasari et al 2019 dataset
The Kasari et al 2019 dataset is from: **Ribosome profiling analysis of eEF3-depleted Saccharomyces cerevisiae**.
Link to paper: https://www.nature.com/articles…
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`README.md` is kind of generic about ribosome profiling, rather than specific about RiboViz. We should emphasize that RiboViz:
* is a **transcriptome-centric** pipeline, which makes it unusual
* i…
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Suggested yeast dataset of interest to me: Ribosome profiling data [GEO: GSE131176](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE131176).
From *Condensation of Ded1p Promotes a Translation…
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Hello and thanks for the nice workflow! I am trying to execute riboseq-flow on some mouse data with the command
`nextflow run iraiosub/riboseq-flow -r v1.1.1 -profile singularity -resume --input sam…
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Hello, I am currently using codonDT_snakemake to analyze my ribosome profiling data. The code will run without any errors and finish, but I am unable to find any output files. I am assuming the output…
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[Humans and other commonly used model organisms are resistant to cycloheximide-mediated biases in ribosome profiling experiments, Sharma et al 2021](https://doi.org/10.1038/s41467-021-25411-y), has da…
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Hi,
I am running Xtail on some Ribosome Profiling data but I am struggling to understand the direction in which the genes are differentially translated.
I ran the package as follows:
```
mRN…