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Hi,
I got a ModuleNotFoundError when testing the RiboCode installation with `RiboCode_onestep -V`
Can you help?
```
$ RiboCode_onestep -V
Traceback (most recent call last):
File "/nexus/posi…
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Hello,
I have ribosome profiling data from two conditions: treatment and control. For both treatment and control I have 3 RNA-seq libraries (quantified by MMSEQ) of the ribosome RNA footprints and …
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Suggested yeast dataset of interest to me: Ribosome profiling data [GEO: GSE131176](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE131176).
From *Condensation of Ded1p Promotes a Translation…
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Hello, I am currently using codonDT_snakemake to analyze my ribosome profiling data. The code will run without any errors and finish, but I am unable to find any output files. I am assuming the output…
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Hello and thanks for the nice workflow! I am trying to execute riboseq-flow on some mouse data with the command
`nextflow run iraiosub/riboseq-flow -r v1.1.1 -profile singularity -resume --input sam…
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Hi,
I am running Xtail on some Ribosome Profiling data but I am struggling to understand the direction in which the genes are differentially translated.
I ran the package as follows:
```
mRN…
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I am building models for herpes virus(NC_006273)
```
3c6eca300124# ./v-build.pl --forcelong NC_006273 NC_006273
# v-build.pl :: build homology model of a single sequence for feature annotation
…
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Datasets for gene feature boundaries, or ncRNA
Data type/ details | method | PMID | First/last author | data source | status | Comment
-- | -- | -- | -- | -- | -- | --
intron/spliceosom…
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Dear all,
The proposal has been made to obsolete GO:0005844 polysome and GO:0042788 polysomal ribosome
see https://github.com/geneontology/go-ontology/issues/24651
Experimental annotations th…
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Request that add some @amandamok's simulated ribosome profiling data into RiboViz as another vignette. This should provide ideal testing that reads are correctly aligned and of codon-level and gene-le…