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Datasets for gene feature boundaries, or ncRNA
Data type/ details | method | PMID | First/last author | data source | status | Comment
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intron/spliceosom…
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> Convolutional neural networks (CNNs) have been shown to perform exceptionally well in a variety of tasks, including biological sequence classification. Available implementations, however, are usuall…
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You could click on the motif and it would enlarge so you can get an idea as to whether or not it would fit in the space.
- Jieux
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https://dx.doi.org/10.1093/nar/gkv1025
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As I mentioned in dev chat, I'd like to see a less cluttered "skeleton" mode of display that only shows the backbone and a bar across the end of each motif/helix. It might make it easier to judge the …
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- [ ] Finish molQTL plotting scripts and plot coverage data for bunch of Colocalized QTL effects
- [ ] Add more GWAS. Need to edit some scripts to accommodate binary outcomes for some gwas... see (…
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Hello, I know this is probably not a bug with the code but I was hoping someone here would know.
I intend to run this on a M1 Mac and I cannot get past the conda env create -f UFold.yml
A few thin…
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Current SBOL RNA-related glyphs (i) do not capture the range of RNA functions and (ii) where they do exist are not expressive enough to precisely annotate the RNA function. A new set of glyphs that mo…
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Terms impacted:
'E-box binding'
'N-box binding'
'RNA polymerase I CORE element sequence-specific DNA binding'
'RNA polymerase I enhancer sequence-specific DNA binding'
'RNA polymerase I upst…
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Hi everyone, I am trying to use the pyscenic workflow to infer grn on my 10X scRNA dataset. I completely followed the demonstration workflow posted on SCENICprotocol cancer data sets using SKCM scRNA …