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### Description of the bug
Hi, I am trying to run the rnaseq pipeline (3.14.0) but I always get stack in the STAR_ALIGN_IGENOMES. THerror is:
.command.sh: line 10: 42 Segmentation fault
I a…
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### Description of the bug
I am running the pipeline on 27 samples. For a few hours in runs fine, and then gets stuck, and zero progress gets made after that (on some runs I've tried as long as two d…
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Hi,
The nfcore/rnaseq pipeline (alignment with STAR-SALMON) runs for days and eventually fails with an exit status of 140. I checked the .out files, there was no explicit error.
Tracing the .out/ …
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Hi! I found a type error caused by an invalid data type for Pandas index while running the tutorial code of https://earmingol.github.io/cell2cell/tutorials/Toy-Example-SingleCellPipeline/.
My cell2…
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### Description of the bug
I have some errors when I run the pipe line with HiSAT2 aligner. If I use same configuration with STAR RSEM, I don't have any errors.
### Command used and termi…
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I just noticed that there seems to be a missing Pacific cod RNAseq set of reads? I have a **sample 92** in my spreadsheets and in the [RNA QC report from Azenta](https://github.com/RobertsLab/project-…
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### Description of the bug
I'm running nf-core/rnaseq with the following command:
```
nextflow run nf-core/rnaseq
-r 3.14.0 …
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Hello, I encoutered a warning today with this code
interactions = c2c.analysis.SingleCellInteractions(rnaseq_data=rnaseq.to_df().T,
ppi_data=lr_pai…
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### Description of the bug
running rnaseq-pipeline locally and I'm having trouble with fail to read the header from "-".
### Command used and terminal output
```console
# my cmd
nextflow run -qs 8…
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Dear Tobias:
I have part of the data 4SU labeled mRNA library built using the total RNAseq. How do I use slamDunk to analyze them. Same issue #89
By the way, what is the mismatch of the slamdunk…