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Test escaping and direct qutoes to be on the safe side
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**_I affirm:_**
- [x] I understand that if I do not agree to the following points by completing the checkboxes my issue will be ignored.
- [x] I have read and understood the [Contributing Guide](htt…
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### Impacted plugin
Jetpack, Search
### Quick summary
When the Jetpack Search block is added to the footer widget area, the filter headings are generated as H4 without a preceding H3, which c…
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There's some good news:
* changing cmake to c++17 and extensions ON seems to work fine
and some not-so-good news:
* SyntaxWarnings in py 3.12
```
=============================== warnings summa…
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When using `cloudsmit-cli` on Python 3.12+, startup begins with a wall of warnings:
```
λ cloudsmith
/home/c/.rye/tools/cloudsmith-cli/lib/python3.12/site-packages/cloudsmith_api/models/cran_upst…
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## Expected Behavior
produce an a3m file for a query sequence on a custom sequence database
## Current Behavior
Got an error message
```
Invalid database read for database data file=CustomSeqDB…
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When annotating site sequence context for motif search, sequences are assumed to have length 31 (+-15), and 20 residues are cut away to make them length 11 (+-5). This fails if the input sequences hav…
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### Is there an existing issue for this?
- [X] I have searched the existing issues.
### Please describe the feature you have in mind and explain what the current shortcomings are?
Editorial/ sequen…
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Homology search started at 2024-08-21 08:40:06.163220.
Settings:
Search method: diamond.
Self-alignment method: native.
Remote fetch enabled: no.
Reading input proteins...
Sulfurospirill…
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Hi Danny,
Thanks for putting together such a cool program. I am working on mapping structures in introns using SHAPE experimental data, do you have any recommendations for search parameters, or do…