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Hi,I am using the scATAC seq data from your article 'Multi-omic profiling reveals widespread dysregulation of innate immunity and hematopoiesis in COVID-19'. The effect of using Signac software for …
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Dear Signac developpers,
I realized that signac requires that the Annotation slot gets the transcript ids stored into `tx_id`. While it is the case for the annotations from `GetGRangesFromEnsDb`, it …
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### Feature description
It would be nice to have something analogous to `flow init`, as a starting point for modifying things. e.g. I wanted to just change the titles, but then running `python dash…
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Hi, I found that most of the datasets including atac information are very large, and it takes me very long time to run the step generating chr-gene relation. Therefore, could you please offer me some …
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Hi,
I tried to test both Signac or SignacFast on the pbmc test data, following line by line the example, but after well over 10 mins, it is still showing.
I
> labels = SignacFast(E = pbmc)
…
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We have the `signac-support@umich.edu` email linked in a few spots across `signac` & friends.
```
$ rg --files-with-matches "signac-support@umich.edu"
signac-docs/CODE_OF_CONDUCT.md
signac-docs/…
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Hey!
Thank you for this great package!
I ran my multiomic data with the stream pipeline and found that it got stuck when generating igraphs.
Specifically in the part below. Any idea?. (I used >…
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https://github.com/argonne-lcf/balsam
https://github.com/materialsproject/jobflow
https://github.com/spotify/luigi
https://github.com/glotzerlab/signac
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Hi febret!
I just today downloaded the tar.gz file containing the latest release of firefly from your [website](http://febret.github.io/firefly/) which I have checked against the latest commit `70b37…
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### Feature description
Coming from https://github.com/glotzerlab/signac/wiki/GSoC-2022-Projects#2-revising-the-signac-flow-api, we can start splitting this up into chunks and move towards kind-of …