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Hi,
I am running fastqwiper using conda to fix one of my files (using the "slow" way). I have paired files (R1 and R2), and only one of them is corrupted (R2). Everything is installed and runs like I…
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Hello,
I'm using the development version of SCENIC+.
When running the snakemake pipeline, it seems to get stuck on 'download_genome_annotations'...
Contents of my Snakemake folder:
-rw-r…
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# Overview
First, great pipeline, I like the way the key files and pages are automatically generated.
As I'm running the pipeline to work in the changes described in [improved_Kd_fitting](https:…
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If PoC elena-bio/snakemake-pipelines-v2#5 is successful, create a Snakemake pipeline using PBHoney
(Depends on elena-bio/snakemake-pipelines-v2#5)
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Hi,
I am currently trying to implement the metaGEM pipeline for the assembly and metabolic reconstruction of eukaryotic (particularly fungal) genomes. I was wondering if EukRep has been integrated …
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### Steps to reproduce
- Symlinks in Warewulf runtime overlay fixing some legacy paths
- Snakemake pipeline accessing data through those symlinks
This leads to somewhere around 1000 stat calls pe…
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Can you provide a detailed explanation on how to run this process? I am a beginner and don't quite understand. Thank you very much
tttxd updated
2 weeks ago
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Issue by @meixilin, moved here from https://github.com/moiexpositoalonsolab/grenepipe/issues/36#issuecomment-2270384816
Hi,
I have an issue that might be relevant to this thread. I have noticed…
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Hello,
I've been working with CARLIN data using the prior MATLAB pipeline and was very excited to migrate to this improved snakemake_DARLIN implementation for batch submissions. I would like to run t…
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**Snakemake version**
8.4.7
**Describe the bug**
Snakemake stops with a `FileNotFoundError` when attempting to inject a global Conda environment defined in a remote module.
I used `snakedepl…