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Current SNP picons from this site are only contain a-z and 0-9 chars (as per the mod from years ago).
Now images such as OpenViX/OpenBH/OpenPLi and derivatives that merge from these can handle full…
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I am new to Regenie and trying to test it on my dataset. here's my setting in step1:
regenie \
--step 1 \
--bed chr22_prune \
--keep lowtg_samples.txt \
--covarFile pheno.txt \
--pheno…
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Hi,
I noticed that the pipeline detects some somatic mutations with VAF = 1 in a specific cell type. Such mutations may be an example of cell-type-specific clonal expansion which may not be true so…
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```
[run_kubernetes_tests.sh:145] ERROR: Tests FAILED from suites: k8s-guest-pull-image-encrypted.bats k8s-guest-pull-image-authenticated.bats k8s-guest-pull-image-signature.bats k8s-confidential-att…
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Dear Dr. Jiabo Wang,
Thank you for maintaining the GAPIT package and your support for the users.
I have been using the FarmCPU model for a while and I have two questions about the SNP effect in th…
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Hello,
Could you point me to a proper VCF to do snp-pileup on WGS for mm10/GRCm38?
I downloaded [00-All.vcf.gz](https://ftp.ncbi.nih.gov/snp/organisms/archive/mouse_10090/VCF/00-All.vcf.gz) but …
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Joseline said that if the reference file has a lot of Ns, it might throw a lot of SNPs.
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Hi,
I saw Ploidetect requires the definition of snp array. Is that used for allele-specific CNV calling?
If that is, can I replace the array by germline SNV sites or some common snp from dbSNP?
…
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Hi,
I'm new to confidential computing, and I want to test AMD sev_snp cooperating with Nvidia H100 to enable CC capability. However, I can't enable sev_snp by following the tutorial of sev-snp-deve…
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Hello Jiabo Wang, I want to know how I get PVE result For each SNP, because the output of PVE file is only for P values