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**Describe the bug**
I want to allow a user to upload a gzipped csv file and parse it in a stream (using `pipeThrough` / `pipeTo`). This works in Node, but not in the browser, where I get:
```
…
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In SPARQL.js, running `npm run spec-base-query` now silently fails with ”0/0 tests”:
```
> sparqljs@3.7.1 spec-base-query
> rdf-test-suite spec/parser.js http://w3c.github.io/rdf-tests/sparql/spa…
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Charles Patton is having some trouble with the BilaraIO scripts parsing the JSON on his machine. I took the liberty of running `jsonlint` across all the JSON files in the repository and indeed a few …
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I encountered an error while using this method: KeyError: 'XcXgXyXtXyXgXd'. So, I checked the result returned by the get_struc_seq method. The seq, which should store the original amino acid sequence,…
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python ./EpiScan/commands/epimapping.py --test ./dataProcess/public/public_sep_testAg.tsv --embedding ./dataProcess/public/fasta/DB1.h5 --outfile ./dataProcess/public/public_sep_testAg.out --device 0
…
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Could this be a version issue with pandas? I'm using pandas 2.2.2 and numpy 2.0.0
```
Building DAG of jobs...
Using shell: /usr/bin/bash
Provided cores: 2
Rules claiming more threads will be sc…
byee4 updated
3 months ago
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data on http://172.16.2.183:home/nidhi/trainSearchStream.tsv.zip
when parse the file get the following msg but would be more useful if the parser lets the user know which column it is referring to…
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I was experimenting with some parser code while I hit a segfault. I was not able to shrink the reproduction unfortunately.
I've added a few debugging statements which are hopefully helpful. The outpu…
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For example, carriage returns should also be escaped properly but not, hence causing troubles like HazyResearch/deepdive#523.
I think this part of the code needs more careful work to conform to [Post…
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**Describe the bug**
TEP annotation can't be updated for 24.09.
**Observed behaviour**
The TEP parser downloads data from https://www.thesgc.org/sites/default/files/fileuploads/available-teps.tsv…