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Hi, thanks for creating this tool!
I have a few questions about how to create the input files and what the output represents:
1. I understand I should convert TCGA .svs files to .tif using this sc…
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Hi,
I have generated the pyramidal .tiff with your script **save_image_at_spacing.py** (https://github.com/DIAGNijmegen/pathology-whole-slide-data/blob/main/scripts/save_image_at_spacing.py). and t…
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Hi Mart,
I hope all is well. I am trying to perform whole-slide inference on a WSI. I want to use the Patch iterator class so that I can extract adjacent patches in an ordered fashion. I also want …
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Hey, I am running the latest commit
5ef669de080814067961f28357256e8fe27544f4
![image](https://github.com/Klace/stable-diffusion-webui-instruct-pix2pix/assets/20077386/91a36ada-294f-4238-a4f7-76f…
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Dear Mart,
In the README, the data/example.ipynb in HookNet-TLS Annotations: https://zenodo.org/records/10614928 only converts XML to PNG, which may not be the Tissue-Background Segmentation Algori…
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Can you please explain what the masked tissue represents from a medical perspective in MSI-H and and MSI-L/MSI-S slides respectively? I will explain.
While reviewing the 47 training slides, I notic…
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Hi there,
I've trained a hooknet model for a binary classification problem (positive or negative for presence of a pathological feature) using an internal dataset and I'd like to now conduct inferenc…
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List of ideas for improving the mask tool:
- Draw mask operations:
- Additional drawing tools: circle (pencil can already do it), ring.
- shrink/expand mask.
- Edition of shapes as vector graphi…
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**In Short**
Zeiss Scanners produce multi-scene images and while BioFormats can read these files, they cannot be viewed together in a 'Whole Slide' view which is acceptable to pathologists. Attempts…
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Hi,
Thank you for putting together this model and sharing the data! I want to run this TLS HookNet on my own data which is aperio pyramidal svs files. However, when I try to resample the images t…
mpl24 updated
1 month ago