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Link to Xena Browser
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Hello,
I cannot find the file **GSE50244_TMM_NormLength.xlsx**, which seems to be required to run `run_islet.sh`. I was able to find related files at GEO accession number GSE50244, but not the exce…
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currently the "data sets pages" tool on xena browser only report "loading error" when the genomics data sets itself has an error, but it does not check if the associated "probeMap" loading also genera…
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which column in the clinical_data should i consider to know if the tumor has recurred or not?
does _RFS_IND=1 mean definitely recurred?
how do i know if the tumor is primary or second primary?…
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I've noticed that some gene names have been converted to dates in `PANCAN_mutation` ([version info](https://github.com/dhimmel/cancer-data/blob/ffe66ab26000379adcd7138b8ff39920d4692ef1/download/PANCAN…
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Goal:
- list the probeMaps, its human readable label, its assembly information.
- click on each listed probeMap, displays a preview of the probeMap
Approach:
add functionality to Datapages.js
…
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I have had this issue in the past ([see zenodo file](https://zenodo.org/deposit/126065/)) and it looks like the current PANCAN_mutation file from xena has less samples and less columns than a previous…
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The tumor data used as input is from the treehouse dataset, available here: https://xenabrowser.net/datapages/?dataset=TumorCompendium_v10_PolyA_hugo_log2tpm_58581genes_2019-07-25.tsv&host=https%…
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Automated end-to-end integration tests should (must) be created for the HCA Data Browser to Terra handoff. Both products are actively being developed, and when things change, sometimes things break. A…