I then ran the following to try to get a Gene Tree:
python3 Zombi.py G params.tsv output
where params.tsv is the following (tabs instead of spaces):
DUPLICATION 0
TRANSFER 0
LOSS 0
INVERSION 0
TRANSLOCATION 0
ORIGINATION 0
INITIAL_GENOME_SIZE 1
VERBOSE 0
I got the following error:
Traceback (most recent call last):
File "Zombi.py", line 254, in <module>
Z.G(parameters_file, experiment_folder, advanced_mode)
File "Zombi.py", line 118, in G
gss.run()
File "/Users/niema/Desktop/ZOMBI/GenomeSimulator.py", line 271, in run
time_to_next_genome_event = self.get_time_to_next_event(len(self.active_genomes), d, t, l, i, c, o)
File "/Users/niema/Desktop/ZOMBI/GenomeSimulator.py", line 624, in get_time_to_next_event
total += sum((d, t, l, i, c, o))
TypeError: unsupported operand type(s) for +: 'int' and 'str'
I ran the following to generate the Species Tree:
where
species.tre
is the following:I then ran the following to try to get a Gene Tree:
where
params.tsv
is the following (tabs instead of spaces):I got the following error: