FPKM was not computed for certain genes in the count file.

AAlhendi1707 / countToFPKM

Convert Counts to Fragments per Kilobase of Transcript per Million (FPKM)

GNU General Public License v3.0

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FPKM was not computed for certain genes in the count file. #8

Closed excel92021 closed 3 years ago

excel92021 commented 3 years ago

I used your code for paired-end data and calculated FPKM of genes. However, if my count file say had 5 genes and 30 samples, the FPKM was returned for only 2 genes, 30 samples. For all the genes, there were a few samples with 0 counts. So I am not able to understand why FPKM for certain genes were not computed.

Thanks!

AAlhendi1707 commented 3 years ago

Try to use the latest version from Github

latest version, install countToFPKM from GitHub

if(!require(devtools)) install.packages("devtools") devtools::install_github("AAlhendi1707/countToFPKM", build_vignettes = TRUE)