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Inactive modules: BBmap & bcl2fastq/1.8.4 #17

Open cselway opened 7 years ago

cselway commented 7 years ago

Although the modules are found in using the module spider command, they are inactive when trying to load them. For example with bcl2fastq/1.8.4

$ export MODULEPATH=/data/acad/apps/modules/all:$MODULEPATH $ rm -r ~/.lmod.d/ $ module spider bcl2fastq Rebuilding cache, please wait ... (written to file) done.

bcl2fastq:

 Versions:
    bcl2fastq/1.8.4
    bcl2fastq/2.17.1.14-foss-2106a
    bcl2fastq/2.19.1.403

 Other possible modules matches:
    bcl2fastq2

To find other possible module matches do: module -r spider '.bcl2fastq.'

To find detailed information about bcl2fastq please enter the full name. For example:

 $ module spider bcl2fastq/2.19.1.403

$ module load bcl2fastq/1.8.4

$ ./RawData1_BCL2fastq2merged_v1.8_fastqjoin.sh 160823_M03191_0154_000000000-AMECW_LWeCSe_16SPreterminfant2_trial

Lmod has detected the following error: The following module(s) are unknown: "bcl2fastq/1.8.4"

Please check the spelling or version number. Also try "module spider ..."

Inactive Modules: 1) bcl2fastq/1.8.4

grahamgower commented 7 years ago

I don't know what ./RawData1_BCL2fastq2merged_v1.8_fastqjoin.sh is. Actually, I don't know much about bcl2fastq at all. @muslih14 has used it successfully, maybe he has suggestions? It looks like @laam21 is using ACAD1 pretty hard, and this might be making the /data/acad mount very slow. This might also be causing problems?