Closed EisenRa closed 6 years ago
Not getting this error anymore, instead:
Traceback (most recent call last): File "/apps/software/Python/2.7.13-foss-2016b/lib/python2.7/logging/init.py", line 885, in emit self.flush() File "/apps/software/Python/2.7.13-foss-2016b/lib/python2.7/logging/init.py", line 845, in flush self.stream.flush() IOError: [Errno 28] No space left on device Logged from file pipeline.py, line 78
I guess /tmp is the disk its complaining about? You might try changing the path for paleomix's temp files. E.g.
$ mkdir -p /localscratch/EisenRa/tmp
$ bam_pipeline run --jar-root $JAR_ROOT --temp-root=/localscratch/EisenRa/tmp makefile.yaml
Not sure why you're getting the Bus error though.
That did the job, thanks!
Getting a bus error (damn that public transport)
[a1683110@acad1 corals]$ export MODULEPATH=/data/acad/apps/modules/all:$MODULEPATH [a1683110@acad1 corals]$ module load paleomix-meta [a1683110@acad1 corals]$ bam_pipeline run --jar-root $JAR_ROOT makefile.yaml Bus error (core dumped)