The current dev branch doesn't produce a bounding box

[cmarshak]

Currently, the Hyp3 plugin doesn't produce a bounding box and CRS polygon within GUNW products.

Here job info that has no bounding box using the new dev branch:

{'job_id': '97eeab3e-fe9f-4dc4-af48-b510317ff973',
 'job_type': 'INSAR_ISCE_TEST',
 'request_time': '2022-01-21T20:39:52+00:00',
 'status_code': 'SUCCEEDED',
 'user_id': 'cmarshak',
 'name': 'final_test_95',
 'job_parameters': {'granules': ['S1B_IW_SLC__1SDV_20200823T045602_20200823T045632_023046_02BC1D_E0C1'],
  'secondary_granules': ['S1B_IW_SLC__1SDV_20191004T045557_20191004T045627_018321_022832_7395']},
 'files': [{'filename': 'S1-GUNW-A-R-095-tops-20200823_20191004-045617-00170W_00052N-PP-6e20-v2_0_5.nc',
   's3': {'bucket': 'hyp3-isce-contentbucket-4xpualmsjg98',
    'key': '97eeab3e-fe9f-4dc4-af48-b510317ff973/S1-GUNW-A-R-095-tops-20200823_20191004-045617-00170W_00052N-PP-6e20-v2_0_5.nc'},
   'size': 57951237,
   'url': 'https://hyp3-isce-contentbucket-4xpualmsjg98.s3.us-west-2.amazonaws.com/97eeab3e-fe9f-4dc4-af48-b510317ff973/S1-GUNW-A-R-095-tops-20200823_20191004-045617-00170W_00052N-PP-6e20-v2_0_5.nc'}],
 'logs': [],
 'browse_images': ['https://hyp3-isce-contentbucket-4xpualmsjg98.s3.us-west-2.amazonaws.com/97eeab3e-fe9f-4dc4-af48-b510317ff973/S1-GUNW-A-R-095-tops-20200823_20191004-045617-00170W_00052N-PP-6e20-v2_0_5.png'],
 'thumbnail_images': [],
 'expiration_time': '2022-07-21T00:00:00+00:00'}

Here is job info for one that does using the old dev branch

{'job_id': '5f8aa59f-5432-4413-aed4-dad5de0c39f5',
 'job_type': 'INSAR_ISCE_TEST',
 'request_time': '2022-01-21T01:15:06+00:00',
 'status_code': 'SUCCEEDED',
 'user_id': 'cmarshak',
 'name': 'test-aleutian-95-new',
 'job_parameters': {'granules': ['S1B_IW_SLC__1SDV_20211007T044004_20211007T044023_029025_0376A1_DA5E'],
  'secondary_granules': ['S1B_IW_SLC__1SDV_20210925T044004_20210925T044034_028850_03715E_25A4']},
 'files': [{'filename': 'S1-GUNW-A-R-124-20211007-20210925-044013-166W_54N-e22e-v2_0_5.nc',
   's3': {'bucket': 'hyp3-isce-contentbucket-4xpualmsjg98',
    'key': '5f8aa59f-5432-4413-aed4-dad5de0c39f5/S1-GUNW-A-R-124-20211007-20210925-044013-166W_54N-e22e-v2_0_5.nc'},
   'size': 34995266,
   'url': 'https://hyp3-isce-contentbucket-4xpualmsjg98.s3.us-west-2.amazonaws.com/5f8aa59f-5432-4413-aed4-dad5de0c39f5/S1-GUNW-A-R-124-20211007-20210925-044013-166W_54N-e22e-v2_0_5.nc'}],
 'logs': [],
 'browse_images': ['https://hyp3-isce-contentbucket-4xpualmsjg98.s3.us-west-2.amazonaws.com/5f8aa59f-5432-4413-aed4-dad5de0c39f5/S1-GUNW-A-R-124-20211007-20210925-044013-166W_54N-e22e-v2_0_5.png'],
 'thumbnail_images': [],
 'expiration_time': '2022-07-21T00:00:00+00:00'}

I will try to run the new dev branch. On leffe and inspect. I am not sure if the new naming could have unexpectly affected the writing of this box? I honestly don't know.

[cmarshak]

Here is what I learned so far.

Using the environment that existed on leffe (I don't think there were any updates specifically to the environment.yml file from the previous three pull-requests), I produced a GUNW with the correct layers including the bounding and CRS polygon using the problematic SLC ids from above (first of two).

I ran conda env update -f environment.yml and will more carefully inspect.

I think it may be a dependency #@!$.

isce2_topsapp --reference-scenes S1B_IW_SLC__1SDV_20200823T045602_20200823T045632_023046_02BC1D_E0C1 \
              --secondary-scenes S1B_IW_SLC__1SDV_20191004T045557_20191004T045627_018321_022832_7395 \
              > topsapp_img.out 2> topsapp_img.err

[cmarshak]

Using this branch: https://github.com/ACCESS-Cloud-Based-InSAR/DockerizedTopsApp/pull/40

I created the "minimum" working example (minimum being here quite large) for product creation from a complete topsapp directory from the one referenced above.

import json

from isce2_topsapp import (aws, download_aux_cal, download_dem_for_isce2,
                           download_orbits, download_slcs,
                           package_gunw_product, prepare_for_delivery,
                           topsapp_processing)
from shapely.geometry import shape
from pathlib import Path

loc_data = json.load(open('loc_data.json'))
loc_data['intersection_geo'] = shape(loc_data['intersection_geo'])

ref_properties = loc_data['reference_properties']
sec_properties = loc_data['secondary_properties']
extent = loc_data['extent']

nc_path = package_gunw_product(isce_data_directory=Path.cwd(),
                               reference_properties=ref_properties,
                               secondary_properties=sec_properties,
                               extent=extent
                               )

The nc_path is PosixPath('/mnt/leffe-data2/cmarshak/topsapp_ex_2022-01-24-weird/merged/S1-GUNW-A-R-095-tops-20200823_20191004-045617-00170W_00052N-PP-6e20-v2_0_5.nc')

[cmarshak]

And maybe this will clarify things further - the "incorrect" product in the link above does not have top two layers used for ARIA-tools. Below is a screenshot of the netcdfs of the two products. On top is the incorrect version and bottom is the correct version.

[cmarshak]

# packages in environment at /u/leffe-data2/cmarshak/miniconda3/envs/topsapp_env:
#
# Name                    Version                   Build  Channel
_libgcc_mutex             0.1                 conda_forge    conda-forge
_openmp_mutex             4.5                       1_gnu    conda-forge
affine                    2.3.0                      py_0    conda-forge
alsa-lib                  1.2.3                h516909a_0    conda-forge
ansiwrap                  0.8.4                      py_0    conda-forge
aom                       3.2.0                h9c3ff4c_2    conda-forge
appdirs                   1.4.4              pyh9f0ad1d_0    conda-forge
argon2-cffi               21.3.0             pyhd8ed1ab_0    conda-forge
argon2-cffi-bindings      21.2.0           py39h3811e60_1    conda-forge
asf_search                3.0.6              pyhd8ed1ab_0    conda-forge
asttokens                 2.0.5              pyhd8ed1ab_0    conda-forge
async_generator           1.10                       py_0    conda-forge
attrs                     21.2.0             pyhd8ed1ab_0    conda-forge
backcall                  0.2.0              pyh9f0ad1d_0    conda-forge
backports                 1.0                        py_2    conda-forge
backports.functools_lru_cache 1.6.4              pyhd8ed1ab_0    conda-forge
backports.zoneinfo        0.2.1            py39h3811e60_4    conda-forge
black                     21.10b0            pyhd8ed1ab_0    conda-forge
bleach                    4.1.0              pyhd8ed1ab_0    conda-forge
blosc                     1.21.0               h9c3ff4c_0    conda-forge
boost-cpp                 1.74.0               h359cf19_5    conda-forge
boto3                     1.20.41            pyhd8ed1ab_0    conda-forge
botocore                  1.23.41            pyhd8ed1ab_0    conda-forge
branca                    0.4.2              pyhd8ed1ab_0    conda-forge
brotli                    1.0.9                h7f98852_6    conda-forge
brotli-bin                1.0.9                h7f98852_6    conda-forge
brotlipy                  0.7.0           py39h3811e60_1003    conda-forge
brunsli                   0.1                  h9c3ff4c_0    conda-forge
bzip2                     1.0.8                h7f98852_4    conda-forge
c-ares                    1.18.1               h7f98852_0    conda-forge
c-blosc2                  2.0.4                h5f21a17_1    conda-forge
ca-certificates           2021.10.8            ha878542_0    conda-forge
cached-property           1.5.2                hd8ed1ab_1    conda-forge
cached_property           1.5.2              pyha770c72_1    conda-forge
cairo                     1.16.0            ha00ac49_1009    conda-forge
certifi                   2021.10.8        py39hf3d152e_1    conda-forge
cffi                      1.15.0           py39h4bc2ebd_0    conda-forge
cfitsio                   4.0.0                h9a35b8e_0    conda-forge
cftime                    1.5.2            py39hce5d2b2_0    conda-forge
chardet                   4.0.0            py39hf3d152e_2    conda-forge
charls                    2.2.0                h9c3ff4c_0    conda-forge
charset-normalizer        2.0.0              pyhd8ed1ab_0    conda-forge
click                     8.0.3            py39hf3d152e_1    conda-forge
click-plugins             1.1.1                      py_0    conda-forge
cligj                     0.7.2              pyhd8ed1ab_1    conda-forge
cloudpickle               2.0.0              pyhd8ed1ab_0    conda-forge
colorama                  0.4.4              pyh9f0ad1d_0    conda-forge
cryptography              36.0.1           py39h95dcef6_0    conda-forge
curl                      7.81.0               h2574ce0_0    conda-forge
cycler                    0.11.0             pyhd8ed1ab_0    conda-forge
cytoolz                   0.11.2           py39h3811e60_1    conda-forge
dask-core                 2021.11.1          pyhd8ed1ab_0    conda-forge
dataclasses               0.8                pyhc8e2a94_3    conda-forge
dateparser                1.1.0              pyhd8ed1ab_0    conda-forge
dbus                      1.13.6               h48d8840_2    conda-forge
debugpy                   1.5.1            py39he80948d_0    conda-forge
decorator                 5.1.0              pyhd8ed1ab_0    conda-forge
defusedxml                0.7.1              pyhd8ed1ab_0    conda-forge
dem-stitcher              0.0.1                    pypi_0    pypi
entrypoints               0.3             py39hde42818_1002    conda-forge
executing                 0.8.2              pyhd8ed1ab_0    conda-forge
expat                     2.4.3                h9c3ff4c_0    conda-forge
ffmpeg                    4.4.1                h6987444_0    conda-forge
fftw                      3.3.10          nompi_h74d3f13_101    conda-forge
fiona                     1.8.20           py39hc5a795b_4    conda-forge
flit-core                 3.6.0              pyhd8ed1ab_0    conda-forge
folium                    0.12.0             pyhd8ed1ab_1    conda-forge
font-ttf-dejavu-sans-mono 2.37                 hab24e00_0    conda-forge
font-ttf-inconsolata      3.000                h77eed37_0    conda-forge
font-ttf-source-code-pro  2.038                h77eed37_0    conda-forge
font-ttf-ubuntu           0.83                 hab24e00_0    conda-forge
fontconfig                2.13.1            hba837de_1005    conda-forge
fonts-conda-ecosystem     1                             0    conda-forge
fonts-conda-forge         1                             0    conda-forge
fonttools                 4.28.5           py39h3811e60_0    conda-forge
freeglut                  3.2.1                h9c3ff4c_2    conda-forge
freetype                  2.10.4               h0708190_1    conda-forge
freexl                    1.0.6                h7f98852_0    conda-forge
fsspec                    2021.11.0          pyhd8ed1ab_0    conda-forge
gdal                      3.4.1            py39h0494519_2    conda-forge
geopandas                 0.10.2             pyhd8ed1ab_1    conda-forge
geopandas-base            0.10.2             pyha770c72_1    conda-forge
geos                      3.10.2               h9c3ff4c_0    conda-forge
geotiff                   1.7.0                h6593c0a_6    conda-forge
gettext                   0.19.8.1          h73d1719_1008    conda-forge
giflib                    5.2.1                h36c2ea0_2    conda-forge
glib                      2.70.2               h780b84a_1    conda-forge
glib-tools                2.70.2               h780b84a_1    conda-forge
gmp                       6.2.1                h58526e2_0    conda-forge
gnutls                    3.6.13               h85f3911_1    conda-forge
graphite2                 1.3.13            h58526e2_1001    conda-forge
gst-plugins-base          1.18.5               hf529b03_2    conda-forge
gstreamer                 1.18.5               h9f60fe5_2    conda-forge
h5py                      3.6.0           nompi_py39h7e08c79_100    conda-forge
harfbuzz                  3.2.0                hb4a5f5f_0    conda-forge
hdf4                      4.2.15               h10796ff_3    conda-forge
hdf5                      1.12.1          nompi_h2750804_101    conda-forge
icu                       69.1                 h9c3ff4c_0    conda-forge
idna                      3.1                pyhd3deb0d_0    conda-forge
imagecodecs               2021.11.20       py39h571908b_1    conda-forge
imageio                   2.9.0                      py_0    conda-forge
importlib-metadata        4.10.1           py39hf3d152e_0    conda-forge
importlib_metadata        4.10.1               hd8ed1ab_0    conda-forge
importlib_resources       5.4.0              pyhd8ed1ab_0    conda-forge
ipykernel                 6.7.0            py39hef51801_0    conda-forge
ipython                   8.0.1            py39hf3d152e_0    conda-forge
ipython_genutils          0.2.0                      py_1    conda-forge
ipywidgets                7.6.5              pyhd8ed1ab_0    conda-forge
isce2                     2.5.3            py39h801b1ec_3    conda-forge
isce2-topsapp             0.0.0                     dev_0    <develop>
jasper                    2.0.33               ha77e612_0    conda-forge
jbig                      2.1               h7f98852_2003    conda-forge
jedi                      0.18.1           py39hf3d152e_0    conda-forge
jinja2                    3.0.3              pyhd8ed1ab_0    conda-forge
jmespath                  0.10.0             pyh9f0ad1d_0    conda-forge
joblib                    1.1.0              pyhd8ed1ab_0    conda-forge
jpeg                      9d                   h36c2ea0_0    conda-forge
json-c                    0.15                 h98cffda_0    conda-forge
jsonschema                3.2.0              pyhd8ed1ab_3    conda-forge
jupyter                   1.0.0            py39hf3d152e_7    conda-forge
jupyter_client            7.0.6              pyhd8ed1ab_0    conda-forge
jupyter_console           6.4.0              pyhd8ed1ab_0    conda-forge
jupyter_core              4.9.1            py39hf3d152e_1    conda-forge
jupyterlab_pygments       0.1.2              pyh9f0ad1d_0    conda-forge
jupyterlab_widgets        1.0.2              pyhd8ed1ab_0    conda-forge
jxrlib                    1.1                  h7f98852_2    conda-forge
kealib                    1.4.14               h87e4c3c_3    conda-forge
kiwisolver                1.3.2            py39h1a9c180_1    conda-forge
krb5                      1.19.2               hcc1bbae_3    conda-forge
lame                      3.100             h7f98852_1001    conda-forge
lcms2                     2.12                 hddcbb42_0    conda-forge
ld_impl_linux-64          2.36.1               hea4e1c9_2    conda-forge
lerc                      3.0                  h9c3ff4c_0    conda-forge
libaec                    1.0.6                h9c3ff4c_0    conda-forge
libblas                   3.9.0           12_linux64_openblas    conda-forge
libbrotlicommon           1.0.9                h7f98852_6    conda-forge
libbrotlidec              1.0.9                h7f98852_6    conda-forge
libbrotlienc              1.0.9                h7f98852_6    conda-forge
libcblas                  3.9.0           12_linux64_openblas    conda-forge
libclang                  13.0.0          default_hc23dcda_0    conda-forge
libcurl                   7.81.0               h2574ce0_0    conda-forge
libdap4                   3.20.6               hd7c4107_2    conda-forge
libdeflate                1.8                  h7f98852_0    conda-forge
libdrm                    2.4.108              h7f98852_0    conda-forge
libedit                   3.1.20191231         he28a2e2_2    conda-forge
libev                     4.33                 h516909a_1    conda-forge
libevent                  2.1.10               h9b69904_4    conda-forge
libffi                    3.4.2                h7f98852_5    conda-forge
libgcc-ng                 11.2.0              h1d223b6_11    conda-forge
libgdal                   3.4.1                h7b6f8d3_2    conda-forge
libgfortran-ng            11.2.0              h69a702a_11    conda-forge
libgfortran5              11.2.0              h5c6108e_11    conda-forge
libglib                   2.70.2               h174f98d_1    conda-forge
libglu                    9.0.0             he1b5a44_1001    conda-forge
libgomp                   11.2.0              h1d223b6_11    conda-forge
libiconv                  1.16                 h516909a_0    conda-forge
libkml                    1.3.0             h238a007_1014    conda-forge
liblapack                 3.9.0           12_linux64_openblas    conda-forge
liblapacke                3.9.0           12_linux64_openblas    conda-forge
libllvm11                 11.1.0               hf817b99_2    conda-forge
libllvm13                 13.0.0               hf817b99_0    conda-forge
libnetcdf                 4.8.1           nompi_hb3fd0d9_101    conda-forge
libnghttp2                1.43.0               h812cca2_1    conda-forge
libnsl                    2.0.0                h7f98852_0    conda-forge
libogg                    1.3.4                h7f98852_1    conda-forge
libopenblas               0.3.18          pthreads_h8fe5266_0    conda-forge
libopencv                 4.5.5            py39h7d09d5f_0    conda-forge
libopus                   1.3.1                h7f98852_1    conda-forge
libpciaccess              0.16                 h516909a_0    conda-forge
libpng                    1.6.37               h21135ba_2    conda-forge
libpq                     14.1                 hd57d9b9_1    conda-forge
libprotobuf               3.19.3               h780b84a_0    conda-forge
librttopo                 1.1.0                hf69c175_9    conda-forge
libsodium                 1.0.18               h36c2ea0_1    conda-forge
libspatialindex           1.9.3                h9c3ff4c_4    conda-forge
libspatialite             5.0.1               h0e567f8_14    conda-forge
libssh2                   1.10.0               ha56f1ee_2    conda-forge
libstdcxx-ng              11.2.0              he4da1e4_11    conda-forge
libtiff                   4.3.0                h6f004c6_2    conda-forge
libuuid                   2.32.1            h7f98852_1000    conda-forge
libva                     2.13.0               h7f98852_0    conda-forge
libvorbis                 1.3.7                h9c3ff4c_0    conda-forge
libvpx                    1.11.0               h9c3ff4c_3    conda-forge
libwebp-base              1.2.1                h7f98852_0    conda-forge
libxcb                    1.13              h7f98852_1003    conda-forge
libxkbcommon              1.0.3                he3ba5ed_0    conda-forge
libxml2                   2.9.12               h885dcf4_1    conda-forge
libzip                    1.8.0                h4de3113_1    conda-forge
libzlib                   1.2.11            h36c2ea0_1013    conda-forge
libzopfli                 1.0.3                h9c3ff4c_0    conda-forge
locket                    0.2.0                      py_2    conda-forge
lxml                      4.7.1                    pypi_0    pypi
lz4-c                     1.9.3                h9c3ff4c_1    conda-forge
mapclassify               2.4.3              pyhd8ed1ab_0    conda-forge
markupsafe                2.0.1            py39h3811e60_1    conda-forge
matplotlib                3.5.1            py39hf3d152e_0    conda-forge
matplotlib-base           3.5.1            py39h2fa2bec_0    conda-forge
matplotlib-inline         0.1.3              pyhd8ed1ab_0    conda-forge
mesalib                   18.3.1               h590aaf7_0    conda-forge
mistune                   0.8.4           py39h3811e60_1005    conda-forge
munch                     2.5.0                      py_0    conda-forge
munkres                   1.1.4              pyh9f0ad1d_0    conda-forge
mypy_extensions           0.4.3            py39hf3d152e_4    conda-forge
mysql-common              8.0.27               ha770c72_1    conda-forge
mysql-libs                8.0.27               hfa10184_1    conda-forge
nbclient                  0.5.5              pyhd8ed1ab_0    conda-forge
nbconvert                 6.4.0            py39hf3d152e_0    conda-forge
nbformat                  5.1.3              pyhd8ed1ab_0    conda-forge
ncurses                   6.2                  h58526e2_4    conda-forge
nest-asyncio              1.5.1              pyhd8ed1ab_0    conda-forge
netcdf4                   1.5.8           nompi_py39h64b754b_101    conda-forge
nettle                    3.6                  he412f7d_0    conda-forge
networkx                  2.6.3              pyhd8ed1ab_1    conda-forge
notebook                  6.4.5              pyha770c72_0    conda-forge
nspr                      4.32                 h9c3ff4c_1    conda-forge
nss                       3.74                 hb5efdd6_0    conda-forge
numpy                     1.22.1           py39h91f2184_0    conda-forge
olefile                   0.46               pyh9f0ad1d_1    conda-forge
opencv                    4.5.5            py39hf3d152e_0    conda-forge
openh264                  2.1.1                h780b84a_0    conda-forge
openjpeg                  2.4.0                hb52868f_1    conda-forge
openmotif                 2.3.8                ha85b609_2    conda-forge
openssl                   1.1.1l               h7f98852_0    conda-forge
packaging                 21.0               pyhd8ed1ab_0    conda-forge
pandas                    1.4.0            py39hde0f152_0    conda-forge
pandoc                    2.16.1               h7f98852_0    conda-forge
pandocfilters             1.5.0              pyhd8ed1ab_0    conda-forge
papermill                 2.3.4              pyhd8ed1ab_0    conda-forge
parso                     0.8.2              pyhd8ed1ab_0    conda-forge
partd                     1.2.0              pyhd8ed1ab_0    conda-forge
pathspec                  0.9.0              pyhd8ed1ab_0    conda-forge
pcre                      8.45                 h9c3ff4c_0    conda-forge
pexpect                   4.8.0              pyh9f0ad1d_2    conda-forge
pickleshare               0.7.5           py39hde42818_1002    conda-forge
pillow                    8.4.0            py39ha612740_0    conda-forge
pip                       21.3.1             pyhd8ed1ab_0    conda-forge
pixman                    0.40.0               h36c2ea0_0    conda-forge
platformdirs              2.3.0              pyhd8ed1ab_0    conda-forge
pooch                     1.5.2              pyhd8ed1ab_0    conda-forge
poppler                   21.11.0              ha39eefc_0    conda-forge
poppler-data              0.4.11               hd8ed1ab_0    conda-forge
postgresql                14.1                 h2510834_1    conda-forge
proj                      8.2.1                h277dcde_0    conda-forge
prometheus_client         0.12.0             pyhd8ed1ab_0    conda-forge
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[jhkennedy]

This appears to be fixed with #42

HyP3 job which produced a product without the bounding box: https://hyp3-isce.asf.alaska.edu/jobs/ec50f428-35fa-420b-b180-53e1c0b7888f

Re-ran job with #42 fix which produced a product with the bounding box: https://hyp3-isce.asf.alaska.edu/jobs/3b2b8e58-5872-4122-bb82-0fbeb3173e3d

@cmarshak does the new job match what you expect?

[cmarshak]

Hey @jhkennedy ,

Awesome!

Yes - those two layers look as we expect. I would like to double check them with ariaExtract.py just to be extra sure. The links you shared are forbidden - can you share the s3 urls?

In addition, I rebuilt the docker image and pulled the latest code from #42; I too got the same behavior. Obviously this is less important than the test above.

[cmarshak]

Never mind - I logged into asf using EDL and the json from the links works fine. I will check products before our meeting.

[cmarshak]

It works on said product - thanks, Joe!

~/bekaert-team/ARIA-tools/tools/bin/ariaExtract.py -f '~/Desktop/S1-GUNW-A-R-095-tops-20180729_20171026-045603-00170W_00052N-PP-ffd9-v2_0_5.nc'
ARIA-tools Version: 1.1.0
*****************************************************************
*** Extract Product Function ***
*****************************************************************
All (1) GUNW products meet spatial bbox criteria.
Group GUNW products into spatiotemporally continuous interferograms.
All (1) interferograms are spatially continuous.
No layers specified; only creating bounding box shapes
Thread count specified for gdal multiprocessing = 2