The ACCESS-MED containerised environment is currently read-only, which causes the catalog-build command to fail when attempting to write or update the catalog.yml file located at access-nri-intake/data/catalog.
Steps to Reproduce
Use the access-med conda environment.
Run any catalog-build command.
Result: The command fails due to the inability to write to the read-only environment.
Additional Context
A potential solution is to introduce an argument that allows users to specify an alternative location for the catalog.yml file, which should be outside the squashfs container. Additionally, a symlink could be created at access-nri-intake/data/catalog, pointing to the desired writable location of the catalog.yml file.
Describe the Bug
The ACCESS-MED containerised environment is currently read-only, which causes the
catalog-build
command to fail when attempting to write or update thecatalog.yml
file located ataccess-nri-intake/data/catalog
.Steps to Reproduce
access-med
conda environment.catalog-build
command.Result: The command fails due to the inability to write to the read-only environment.
Additional Context
A potential solution is to introduce an argument that allows users to specify an alternative location for the
catalog.yml
file, which should be outside the squashfs container. Additionally, a symlink could be created ataccess-nri-intake/data/catalog
, pointing to the desired writable location of thecatalog.yml
file.