[REVIEW]: responder test

[med-oc]

Submitting author: !--author-handle-->@max-anu<!--end-author-handle-- (Max Proft) Repository: https://github.com/max-anu/example-medportal1 Branch with paper.md (empty if default branch): Version: v2.1.3 a Editor: !--editor-->@max-anu<!--end-editor-- Reviewers: !--reviewers-list-->@max-anu<!--end-reviewers-list-- Archive: 10.21105/medportal.00103

Status

Status badge code:

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Markdown: [![status](https://medportal-dev-6a745f452687.herokuapp.com/papers/696010b623ad0751d58e31d512ad5ff8/status.svg)](https://medportal-dev-6a745f452687.herokuapp.com/papers/696010b623ad0751d58e31d512ad5ff8)

Reviewers and authors:

Please avoid lengthy details of difficulties in the review thread. Instead, please create a new issue in the target repository and link to those issues (especially acceptance-blockers) by leaving comments in the review thread below. (For completists: if the target issue tracker is also on GitHub, linking the review thread in the issue or vice versa will create corresponding breadcrumb trails in the link target.)

Reviewer instructions & questions

@max-anu, your review will be checklist based. Each of you will have a separate checklist that you should update when carrying out your review. First of all you need to run this command in a separate comment to create the checklist:

@med-oc generate my checklist

The reviewer guidelines are available here: https://joss.readthedocs.io/en/latest/reviewer_guidelines.html. Any questions/concerns please let @max-anu know.

✨ Please start on your review when you are able, and be sure to complete your review in the next six weeks, at the very latest ✨

Checklists

📝 Checklist for @max-anu

[med-oc]

Hello humans, I'm @med-oc, a robot that can help you with some common editorial tasks.

For a list of things I can do to help you, just type:

@med-oc help

For example, to regenerate the paper pdf after making changes in the paper's md or bib files, type:

@med-oc generate pdf

[max-anu]

@med-oc generate pdf

[med-oc]

:point_right::page_facing_up: Download article proof :page_facing_up: View article proof on GitHub :page_facing_up: :point_left:

[max-anu]

Hello @med-oc

[med-oc]

Hi!

[max-anu]

@med-oc help

[med-oc]

Hello @max-anu, here are the things you can ask me to do:

# List all available commands
@med-oc help

# Show our community Code of Conduct and Guidelines
@med-oc code of conduct

# Add to this issue's reviewers list
@med-oc add @username as reviewer

# Remove from this issue's reviewers list
@med-oc remove @username from reviewers

# Assign a user as the editor of this submission
@med-oc assign @username as editor

# Remove the editor assigned to this submission
@med-oc remove editor

# Send an invitation to a user to collaborate in the review
@med-oc invite @username

# Add a user to this issue's assignees list
@med-oc add assignee: @username

# Remove a user from this issue's assignees list
@med-oc remove assignee: @username

# Replies to 'list editors'
@med-oc list editors

# Set a value for version
@med-oc set v1.0.0 as version

# Set a value for archive
@med-oc set 10.21105/medportal.12345 as archive

# Label issue with: reviewed, recommend publication, pending publication. Remove labels: ongoing, pending review
@med-oc review successful

# Label issue with: recommend rejection
@med-oc review failed

# Close the issue
@med-oc reject

# Add review checklist for a user
@med-oc add checklist for @username

# Remove the checklist for a user
@med-oc remove checklist for @username

# Generates the pdf paper
@med-oc generate pdf

# Recommends the submission for acceptance
@med-oc recommend-accept

# Accept and publish the paper
@med-oc accept

# Generates a LaTeX preprint file
@med-oc generate preprint

# Open the review issue
@med-oc start review

# Adds a checklist for the reviewer using this command
@med-oc generate my checklist

[max-anu]

@med-oc list editors

[med-oc]

Current recipe editors

@AndyHoggANU
@CodeGat
@MartinDix
@NBateman-bit
@OKaluza
@Quartzer2
@SeanBryan51
@aidanheerdegen
@anton-seaice
@atteggiani
@bschroeter
@ccarouge
@dougiesquire
@echus
@ezhilsabareesh8
@flicj191
@harshula
@headmetal
@heidinett
@jo-basevi
@kdruken
@kieranricardo
@max-anu
@med-oc
@penguian
@rbeucher
@rogeredberg
@svenbuder
@utkarshgupta95

[max-anu]

@med-oc remove editor

[med-oc]

Editor removed!

[max-anu]

@med-oc add @max-anu as editor

[med-oc]

Assigned! @max-anu is now the editor

[max-anu]

@med-oc check repository

[med-oc]

I'm sorry human, I don't understand that. You can see what commands I support by typing:

@med-oc help

[max-anu]

Review checklist for @max-anu

Conflict of interest

• [ ] I confirm that I have read the JOSS conflict of interest (COI) policy and that: I have no COIs with reviewing this work or that any perceived COIs have been waived by JOSS for the purpose of this review.

Code of Conduct

• [ ] I confirm that I read and will adhere to the JOSS code of conduct.

General checks

• [ ] Repository: Is the source code for this software available at the https://github.com/max-anu/example-medportal1?
• [ ] License: Does the repository contain a plain-text LICENSE file with the contents of an OSI approved software license?
• [ ] Contribution and authorship: Has the submitting author (@max-anu) made major contributions to the software? Does the full list of paper authors seem appropriate and complete?
• [ ] Substantial scholarly effort: Does this submission meet the scope eligibility described in the JOSS guidelines
• [ ] Data sharing: If the paper contains original data, data are accessible to the reviewers. If the paper contains no original data, please check this item.
• [ ] Reproducibility: If the paper contains original results, results are entirely reproducible by reviewers. If the paper contains no original results, please check this item.
• [ ] Human and animal research: If the paper contains original data research on humans subjects or animals, does it comply with JOSS's human participants research policy and/or animal research policy? If the paper contains no such data, please check this item.

Functionality

• [ ] Installation: Does installation proceed as outlined in the documentation?
• [ ] Functionality: Have the functional claims of the software been confirmed?
• [ ] Performance: If there are any performance claims of the software, have they been confirmed? (If there are no claims, please check off this item.)

Documentation

• [ ] A statement of need: Do the authors clearly state what problems the software is designed to solve and who the target audience is?
• [ ] Installation instructions: Is there a clearly-stated list of dependencies? Ideally these should be handled with an automated package management solution.
• [ ] Example usage: Do the authors include examples of how to use the software (ideally to solve real-world analysis problems).
• [ ] Functionality documentation: Is the core functionality of the software documented to a satisfactory level (e.g., API method documentation)?
• [ ] Automated tests: Are there automated tests or manual steps described so that the functionality of the software can be verified?
• [ ] Community guidelines: Are there clear guidelines for third parties wishing to 1) Contribute to the software 2) Report issues or problems with the software 3) Seek support

Software paper

• [ ] Summary: Has a clear description of the high-level functionality and purpose of the software for a diverse, non-specialist audience been provided?
• [ ] A statement of need: Does the paper have a section titled 'Statement of need' that clearly states what problems the software is designed to solve, who the target audience is, and its relation to other work?
• [ ] State of the field: Do the authors describe how this software compares to other commonly-used packages?
• [ ] Quality of writing: Is the paper well written (i.e., it does not require editing for structure, language, or writing quality)?
• [ ] References: Is the list of references complete, and is everything cited appropriately that should be cited (e.g., papers, datasets, software)? Do references in the text use the proper citation syntax?

[max-anu]

@med-oc set version as v2.1.3 a

[med-oc]

I'm sorry human, I don't understand that. You can see what commands I support by typing:

@med-oc help

[max-anu]

@med-oc set v2.1.3 a as version

[med-oc]

Done! version is now v2.1.3 a

[max-anu]

@med-oc set 10.21105/medportal.00103 as archive

[med-oc]

Done! archive is now 10.21105/medportal.00103

[max-anu]

@med-oc thanks

[med-oc]

You are welcome

[max-anu]

@med-oc abldifadj

[med-oc]

I'm sorry human, I don't understand that. You can see what commands I support by typing:

@med-oc help

[max-anu]

@med-oc reject