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ACCESS-NRI / payu-condaenv

A conda (mamba) python environment for running payu
Apache License 2.0
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Install of nco required for ice post-processing #23

Closed aidanheerdegen closed 5 months ago

aidanheerdegen commented 6 months ago

Ice post-processing (concatenation) of daily ice data files requires installation of ~cdo~ nco

https://github.com/ACCESS-NRI/access-om2-configs/issues/16#issuecomment-1970482151

anton-seaice commented 6 months ago

Where is micromamba installed (on gadi) ?

aidanheerdegen commented 5 months ago

Where is micromamba installed (on gadi) ?

In this case I don't think it is. The workflow creates the environment on the GitHub runner and uses conda pack to create a self-contained environment that is unpacked on gadi

https://github.com/ACCESS-NRI/payu-condaenv/blob/main/.github/workflows/deploy.yml#L31-L50

But @CodeGat would know more.

anton-seaice commented 5 months ago

I am actually not sure we need to make this change? We can just module load nco and it is provided by the system ?

aidanheerdegen commented 5 months ago

I am actually not sure we need to make this change? We can just module load nco and it is provided by the system ?

Yes we could. We have to install other supporting software so to my mind it seems reasonable to include nco as well.

Avoiding module load also makes the script less NCI specific in my mind. Potentially also testable outside an NCI environment .