ACED-IDP / gen3_util

Collection of command line tools to interact with a Gen3 instance
MIT License
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Feature/pivot improvements #82

Closed matthewpeterkort closed 2 months ago

matthewpeterkort commented 5 months ago

Leverages "Focus" observation field to show all data for a specific patient. Tested with Specimen and Procedure Sub types.

Note: This currently breaks loading of Synthea data, because the synthetic data does not have a "focus" key on observations, but the other datasets do.

Currently don't see a need to write special code for special case data.

Need to do more etl testing. not sure if the entire dataframe that is generated is making it to elastic.

matthewpeterkort commented 2 months ago

LGTM