ACED-IDP / submission

Submit FHIR based data into a Gen3 Commons
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Feature/meta graph: counts rm #4

Closed bwalsh closed 1 year ago

bwalsh commented 1 year ago

This PR adds commands to meta flat. Note: the rm command removes all project content from the graph

 aced_submission meta graph counts --format json | jq -rc '.[] | select(.project_id == "aced-Alzheimers") | [.table, .count]'
["node_researchstudy",1]
["node_patient",287]
["node_researchsubject",287]
["node_specimen",75]
["node_observation",192086]
["node_condition",4311]
["node_medicationadministration",199]
["node_documentreference",730]
["node_task",75]
 gen3_util projects ls
...
  /programs/aced/projects/Alzheimers:
    exists: false