ACES-CMZ / reduction_ACES

Reduction scripts and tools for ACES
https://worldwidetelescope.org/webclient/?wtml=https://data.rc.ufl.edu/pub/adamginsburg/ACES/mosaics/mosaics.wtml
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Giant Cube: HCNO (12m + 7m + TP) #386

Open keflavich opened 10 months ago

keflavich commented 10 months ago

This thread is for discussion of the fully-combined HCNO cubes.

As of 11/13/2023, there are the following cubes:

-rw-rw-r--+ 1 adamginsburg adamginsburg 659G Sep 15 16:13 /orange/adamginsburg/ACES//mosaics/cubes/HNCO_7m12mTP_CubeMosaic_20230910.fits
-rw-r--r--  1 adamginsburg adamginsburg 8.2G Oct 11 02:12 /orange/adamginsburg/ACES//mosaics/cubes/HNCO_7m12mTP_CubeMosaic_downsample9.fits
-rw-r--r--  1 adamginsburg adamginsburg 8.2G Sep 15 16:13 /orange/adamginsburg/ACES//mosaics/cubes/HNCO_7m12mTP_CubeMosaic_downsampled920230910.fits
-rw-r--r--  1 adamginsburg adamginsburg 1.7G Sep 17 07:48 /orange/adamginsburg/ACES//mosaics/cubes/HNCO_7m12mTP_CubeMosaic_downsampled9_downsampledspectrally.fits
-rw-r--r--  1 adamginsburg adamginsburg 8.2G Oct  2 05:23 /orange/adamginsburg/ACES//mosaics/cubes/HNCO_7m12mTP_CubeMosaic_downsampled9.fits 
-rw-rw-r--+ 1 adamginsburg adamginsburg 659G Oct  1 11:09 /orange/adamginsburg/ACES//mosaics/cubes/HNCO_7m12mTP_CubeMosaic.fits

The 20230910 versions are deprecated and were just kept as backups; they'll be deleted sometime.

This one is badly broken and being removed

-rw-r--r--  1 adamginsburg adamginsburg 8.2G Oct  2 05:23 /orange/adamginsburg/ACES//mosaics/cubes/HNCO_7m12mTP_CubeMosaic_downsampled9.fits 
image

The preferred, right now, are:

-rw-r--r--  1 adamginsburg adamginsburg 8.2G Oct 11 02:12 /orange/adamginsburg/ACES//mosaics/cubes/HNCO_7m12mTP_CubeMosaic_downsample9.fits
-rw-rw-r--+ 1 adamginsburg adamginsburg 659G Oct  1 11:09 /orange/adamginsburg/ACES//mosaics/cubes/HNCO_7m12mTP_CubeMosaic.fits
keflavich commented 10 months ago

Downsampled spectrally is fine, but spatially incomplete and needs to be remade:

image

The full cube is in a good state, but is missing field af

image
keflavich commented 10 months ago

@ashleythomasbarnes noted edge issues in the peak intensity map:

image
keflavich commented 10 months ago

Channel 693 is bad:

image
keflavich commented 10 months ago

Field af is still broken; that's the one field with junk it in in HNCO specifically: https://github.com/ACES-CMZ/reduction_ACES/issues/255#issuecomment-1748352454

keflavich commented 10 months ago

@ashleythomasbarnes the reason for your edge effects is as I said: these are the boundaries between sub-regions:

image image image

if you want peak intensity maps without those problems, limit the range to -60 < v < 68 km/s. Or we can try to come up with an edge-excluding mask. You might do that by, e.g.:

data = fits.getdata('HNCO_7m12mTP_CubeMosaic_downsample9.fits')
mask = np.isnan(data)
mask = scipy.ndimage.binary_dilation(mask, iterations=5)
data[mask] = 0
peak = np.max(data, axis=0)

but be wary of the costs of doing that... (even with spectral cube as the backend)

ashleythomasbarnes commented 10 months ago

Also note that there is still some continuum in this images... I ran very basic continuum identification on the cubes and get the following continuum map. Screenshot 2023-11-14 at 13 26 07

d-l-walker commented 10 months ago

@ashleythomasbarnes I guess this is related to what Álvaro mentioned during the f2f meeting? That most cubes still appear to have some continuum throughout the mosaic, particularly near Sgr B2/A*. What you're showing seems to confirm that pretty clearly.

mpound commented 9 months ago

HNCO_CubeMosaic_downsampled9.fits - first 381 channels are blank, then intermittent blank channels subsequently. HNCO_7m12mTP_CubeMosaic_downsampled9.fits - has the checkerboard "didn't finish writing" problem