Changed the viewer to run as a Bokeh server within a Docker container. I moved the functions within main.py to a module named utils.py for better readability.
Added a reprojection process within Nextflow so the images are projected onto a Cartesian/rectilinear grid for visualisation. This is done because Bokeh doesn't support non-rectilinear projections.
Updated the README to reflect the new visualisation setup steps.
One thing to still add is Singularity container support for use on Pawsey.
main.pyto a module namedutils.pyfor better readability.One thing to still add is Singularity container support for use on Pawsey.