search

ADAH-EviDENce / NewsReader

Docker build of full NewsReader pipeline in Dutch.
Apache License 2.0
2 stars 4 forks source link

ixa-heideltime throws compilation error #16

Closed wmkouw closed 6 years ago

wmkouw commented 6 years ago

Goal: Compile NAF wrapper for Heideltime module.

Input: Completed instructions on repo and started mvn clean install. ixa-heideltime is on commit 9656616 and heideltime-standalone jar is on version 2.2.1

Problem: Compilation error involving UimaContextImpl

Stack trace:

[ERROR] COMPILATION ERROR : 
[INFO] -------------------------------------------------------------
[ERROR] /home/&USERNAME/ixa-heideltime/src/main/java/ixa/pipe/time/IXAPipeHeidelTime.java:[159,47] constructor UimaContextImpl in class de.unihd.dbs.heideltime.standalone.components.impl.UimaContextImpl cannot be applied to given types;
  required: de.unihd.dbs.uima.annotator.heideltime.resources.Language,de.unihd.dbs.heideltime.standalone.DocumentType,java.lang.Boolean
  found: de.unihd.dbs.uima.annotator.heideltime.resources.Language,de.unihd.dbs.heideltime.standalone.DocumentType
  reason: actual and formal argument lists differ in length
[INFO] 1 error
[INFO] -------------------------------------------------------------
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 5.599 s
[INFO] Finished at: 2018-03-28T13:29:22+02:00
[INFO] Final Memory: 18M/299M
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-compiler-plugin:3.1:compile (default-compile) on project time: Compilation failure
[ERROR] /home/$USERNAME/ixa-heideltime/src/main/java/ixa/pipe/time/IXAPipeHeidelTime.java:[159,47] constructor UimaContextImpl in class de.unihd.dbs.heideltime.standalone.components.impl.UimaContextImpl cannot be applied to given types;
[ERROR]   required: de.unihd.dbs.uima.annotator.heideltime.resources.Language,de.unihd.dbs.heideltime.standalone.DocumentType,java.lang.Boolean
[ERROR]   found: de.unihd.dbs.uima.annotator.heideltime.resources.Language,de.unihd.dbs.heideltime.standalone.DocumentType
[ERROR]   reason: actual and formal argument lists differ in length
[ERROR] 
[ERROR] -> [Help 1]
org.apache.maven.lifecycle.LifecycleExecutionException: Failed to execute goal org.apache.maven.plugins:maven-compiler-plugin:3.1:compile (default-compile) on project time: Compilation failure
/home/$UNAME/ixa-heideltime/src/main/java/ixa/pipe/time/IXAPipeHeidelTime.java:[159,47] constructor UimaContextImpl in class de.unihd.dbs.heideltime.standalone.components.impl.UimaContextImpl cannot be applied to given types;
  required: de.unihd.dbs.uima.annotator.heideltime.resources.Language,de.unihd.dbs.heideltime.standalone.DocumentType,java.lang.Boolean
  found: de.unihd.dbs.uima.annotator.heideltime.resources.Language,de.unihd.dbs.heideltime.standalone.DocumentType
  reason: actual and formal argument lists differ in length

    at org.apache.maven.lifecycle.internal.MojoExecutor.execute (MojoExecutor.java:213)
    at org.apache.maven.lifecycle.internal.MojoExecutor.execute (MojoExecutor.java:154)
    at org.apache.maven.lifecycle.internal.MojoExecutor.execute (MojoExecutor.java:146)
    at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject (LifecycleModuleBuilder.java:117)
    at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject (LifecycleModuleBuilder.java:81)
    at org.apache.maven.lifecycle.internal.builder.singlethreaded.SingleThreadedBuilder.build (SingleThreadedBuilder.java:51)
    at org.apache.maven.lifecycle.internal.LifecycleStarter.execute (LifecycleStarter.java:128)
    at org.apache.maven.DefaultMaven.doExecute (DefaultMaven.java:309)
    at org.apache.maven.DefaultMaven.doExecute (DefaultMaven.java:194)
    at org.apache.maven.DefaultMaven.execute (DefaultMaven.java:107)
    at org.apache.maven.cli.MavenCli.execute (MavenCli.java:993)
    at org.apache.maven.cli.MavenCli.doMain (MavenCli.java:345)
    at org.apache.maven.cli.MavenCli.main (MavenCli.java:191)
    at sun.reflect.NativeMethodAccessorImpl.invoke0 (Native Method)
    at sun.reflect.NativeMethodAccessorImpl.invoke (NativeMethodAccessorImpl.java:62)
    at sun.reflect.DelegatingMethodAccessorImpl.invoke (DelegatingMethodAccessorImpl.java:43)
    at java.lang.reflect.Method.invoke (Method.java:498)
    at org.codehaus.plexus.classworlds.launcher.Launcher.launchEnhanced (Launcher.java:289)
    at org.codehaus.plexus.classworlds.launcher.Launcher.launch (Launcher.java:229)
    at org.codehaus.plexus.classworlds.launcher.Launcher.mainWithExitCode (Launcher.java:415)
    at org.codehaus.plexus.classworlds.launcher.Launcher.main (Launcher.java:356)
Caused by: org.apache.maven.plugin.compiler.CompilationFailureException: Compilation failure
/home/$UNAME/ixa-heideltime/src/main/java/ixa/pipe/time/IXAPipeHeidelTime.java:[159,47] constructor UimaContextImpl in class de.unihd.dbs.heideltime.standalone.components.impl.UimaContextImpl cannot be applied to given types;
  required: de.unihd.dbs.uima.annotator.heideltime.resources.Language,de.unihd.dbs.heideltime.standalone.DocumentType,java.lang.Boolean
  found: de.unihd.dbs.uima.annotator.heideltime.resources.Language,de.unihd.dbs.heideltime.standalone.DocumentType
  reason: actual and formal argument lists differ in length

    at org.apache.maven.plugin.compiler.AbstractCompilerMojo.execute (AbstractCompilerMojo.java:858)
    at org.apache.maven.plugin.compiler.CompilerMojo.execute (CompilerMojo.java:129)
    at org.apache.maven.plugin.DefaultBuildPluginManager.executeMojo (DefaultBuildPluginManager.java:134)
    at org.apache.maven.lifecycle.internal.MojoExecutor.execute (MojoExecutor.java:208)
    at org.apache.maven.lifecycle.internal.MojoExecutor.execute (MojoExecutor.java:154)
    at org.apache.maven.lifecycle.internal.MojoExecutor.execute (MojoExecutor.java:146)
    at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject (LifecycleModuleBuilder.java:117)
    at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject (LifecycleModuleBuilder.java:81)
    at org.apache.maven.lifecycle.internal.builder.singlethreaded.SingleThreadedBuilder.build (SingleThreadedBuilder.java:51)
    at org.apache.maven.lifecycle.internal.LifecycleStarter.execute (LifecycleStarter.java:128)
    at org.apache.maven.DefaultMaven.doExecute (DefaultMaven.java:309)
    at org.apache.maven.DefaultMaven.doExecute (DefaultMaven.java:194)
    at org.apache.maven.DefaultMaven.execute (DefaultMaven.java:107)
    at org.apache.maven.cli.MavenCli.execute (MavenCli.java:993)
    at org.apache.maven.cli.MavenCli.doMain (MavenCli.java:345)
    at org.apache.maven.cli.MavenCli.main (MavenCli.java:191)
    at sun.reflect.NativeMethodAccessorImpl.invoke0 (Native Method)
    at sun.reflect.NativeMethodAccessorImpl.invoke (NativeMethodAccessorImpl.java:62)
    at sun.reflect.DelegatingMethodAccessorImpl.invoke (DelegatingMethodAccessorImpl.java:43)
    at java.lang.reflect.Method.invoke (Method.java:498)
    at org.codehaus.plexus.classworlds.launcher.Launcher.launchEnhanced (Launcher.java:289)
    at org.codehaus.plexus.classworlds.launcher.Launcher.launch (Launcher.java:229)
    at org.codehaus.plexus.classworlds.launcher.Launcher.mainWithExitCode (Launcher.java:415)
    at org.codehaus.plexus.classworlds.launcher.Launcher.main (Launcher.java:356)
wmkouw commented 6 years ago

Line 159 in ixa-heideltime/src/main/java/ixa/pipe/time/IXAPipeHeidelTime.java contains: heidelTime.initialize(new UimaContextImpl(language, typeToProcess))

This should be changed into heidelTime.initialize(new UimaContextImpl(language, typeToProcess, doIntervalTagging))

The compilation error is caused by the missing argument doIntervalTagging.

wmkouw commented 6 years ago

Compiling unaltered files with maven-compiler-plugin 2.4 (changed in pom.xml; source=1.8, target=1.8) throws "cannot be applied to given types" error:

[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 4.512 s
[INFO] Finished at: 2018-03-29T08:19:22+02:00
[INFO] Final Memory: 19M/205M
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-compiler-plugin:2.4:compile (default-compile) on project time: Compilation failure
[ERROR] /home/$UNAME/ixa-heideltime/src/main/java/ixa/pipe/time/IXAPipeHeidelTime.java:[159,25] error: constructor UimaContextImpl in class UimaContextImpl cannot be applied to given types;
[ERROR] 
[ERROR] -> [Help 1]
org.apache.maven.lifecycle.LifecycleExecutionException: Failed to execute goal org.apache.maven.plugins:maven-compiler-plugin:2.4:compile (default-compile) on project time: Compilation failure
/home/$UNAME/ixa-heideltime/src/main/java/ixa/pipe/time/IXAPipeHeidelTime.java:[159,25] error: constructor UimaContextImpl in class UimaContextImpl cannot be applied to given types;

    at org.apache.maven.lifecycle.internal.MojoExecutor.execute (MojoExecutor.java:213)
    at org.apache.maven.lifecycle.internal.MojoExecutor.execute (MojoExecutor.java:154)
    at org.apache.maven.lifecycle.internal.MojoExecutor.execute (MojoExecutor.java:146)
    at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject (LifecycleModuleBuilder.java:117)
    at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject (LifecycleModuleBuilder.java:81)
    at org.apache.maven.lifecycle.internal.builder.singlethreaded.SingleThreadedBuilder.build (SingleThreadedBuilder.java:51)
    at org.apache.maven.lifecycle.internal.LifecycleStarter.execute (LifecycleStarter.java:128)
    at org.apache.maven.DefaultMaven.doExecute (DefaultMaven.java:309)
    at org.apache.maven.DefaultMaven.doExecute (DefaultMaven.java:194)
    at org.apache.maven.DefaultMaven.execute (DefaultMaven.java:107)
    at org.apache.maven.cli.MavenCli.execute (MavenCli.java:993)
    at org.apache.maven.cli.MavenCli.doMain (MavenCli.java:345)
    at org.apache.maven.cli.MavenCli.main (MavenCli.java:191)
    at sun.reflect.NativeMethodAccessorImpl.invoke0 (Native Method)
    at sun.reflect.NativeMethodAccessorImpl.invoke (NativeMethodAccessorImpl.java:62)
    at sun.reflect.DelegatingMethodAccessorImpl.invoke (DelegatingMethodAccessorImpl.java:43)
    at java.lang.reflect.Method.invoke (Method.java:498)
    at org.codehaus.plexus.classworlds.launcher.Launcher.launchEnhanced (Launcher.java:289)
    at org.codehaus.plexus.classworlds.launcher.Launcher.launch (Launcher.java:229)
    at org.codehaus.plexus.classworlds.launcher.Launcher.mainWithExitCode (Launcher.java:415)
    at org.codehaus.plexus.classworlds.launcher.Launcher.main (Launcher.java:356)
Caused by: org.apache.maven.plugin.CompilationFailureException: Compilation failure
/home/$UNAME/ixa-heideltime/src/main/java/ixa/pipe/time/IXAPipeHeidelTime.java:[159,25] error: constructor UimaContextImpl in class UimaContextImpl cannot be applied to given types;

    at org.apache.maven.plugin.AbstractCompilerMojo.execute (AbstractCompilerMojo.java:678)
    at org.apache.maven.plugin.CompilerMojo.execute (CompilerMojo.java:128)
    at org.apache.maven.plugin.DefaultBuildPluginManager.executeMojo (DefaultBuildPluginManager.java:134)
    at org.apache.maven.lifecycle.internal.MojoExecutor.execute (MojoExecutor.java:208)
    at org.apache.maven.lifecycle.internal.MojoExecutor.execute (MojoExecutor.java:154)
    at org.apache.maven.lifecycle.internal.MojoExecutor.execute (MojoExecutor.java:146)
    at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject (LifecycleModuleBuilder.java:117)
    at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject (LifecycleModuleBuilder.java:81)
    at org.apache.maven.lifecycle.internal.builder.singlethreaded.SingleThreadedBuilder.build (SingleThreadedBuilder.java:51)
    at org.apache.maven.lifecycle.internal.LifecycleStarter.execute (LifecycleStarter.java:128)
    at org.apache.maven.DefaultMaven.doExecute (DefaultMaven.java:309)
    at org.apache.maven.DefaultMaven.doExecute (DefaultMaven.java:194)
    at org.apache.maven.DefaultMaven.execute (DefaultMaven.java:107)
    at org.apache.maven.cli.MavenCli.execute (MavenCli.java:993)
    at org.apache.maven.cli.MavenCli.doMain (MavenCli.java:345)
    at org.apache.maven.cli.MavenCli.main (MavenCli.java:191)
    at sun.reflect.NativeMethodAccessorImpl.invoke0 (Native Method)
    at sun.reflect.NativeMethodAccessorImpl.invoke (NativeMethodAccessorImpl.java:62)
    at sun.reflect.DelegatingMethodAccessorImpl.invoke (DelegatingMethodAccessorImpl.java:43)
    at java.lang.reflect.Method.invoke (Method.java:498)
    at org.codehaus.plexus.classworlds.launcher.Launcher.launchEnhanced (Launcher.java:289)
    at org.codehaus.plexus.classworlds.launcher.Launcher.launch (Launcher.java:229)
    at org.codehaus.plexus.classworlds.launcher.Launcher.mainWithExitCode (Launcher.java:415)
    at org.codehaus.plexus.classworlds.launcher.Launcher.main (Launcher.java:356)
wmkouw commented 6 years ago

UimaContextImpl third argument is not the private Boolean doIntervalTagging, but the Boolean debug (https://www.programcreek.com/java-api-examples/index.php?source_dir=heideltime-master/src/de/unihd/dbs/heideltime/standalone/components/impl/JCasFactoryImpl.java#)

wmkouw commented 6 years ago

@antske reports that these compilation errors do not occur on macOS (2 systems checked).

I have tried compiling it with openjdk-8, oracle-java-8 and the JDK-10. Same error each time.

wmkouw commented 6 years ago

Plugging in false for debug in line 159 of IXAPipeHeidelTime.java leads to jCas factory initialization errors -> #17.

But there might be a workaround there.

wmkouw commented 6 years ago

The problem occurs because I had a source version of heideltime installed in my local maven repository (~/.m2/repository). During compilation, maven imported the UimaContextImpl class from the source version, instead of the local dependency set by install-to-project-repo.py:

<repository>
    <id>heideltime-local-dependency-repo</id>
    <url>file://${basedir}/repo</url>
</repository>

It threw its error because no argument was given for debug.

Initially, I did not have a folder named unihd in ~/.m2/repository/de/ and I therefore concluded that I did not have a local installation of heideltime. However, removing ~/.m2/ entirely and letting maven download everything again, made sure that the compilation succeeded.