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AFM-SPM / TopoStats

An AFM image analysis program to batch process data and obtain statistics from images
https://afm-spm.github.io/TopoStats/
GNU Lesser General Public License v3.0
59 stars 11 forks source link

Statistics and image output for single molecules #382

Open Jean-Du opened 1 year ago

Jean-Du commented 1 year ago

Is your feature request related to a problem? Please describe. At the moment, all output are either directory based or file based. An optional molecular level output is needed, especially after PR #365 is merged

Describe the solution you'd like I am not sure what is the best way to approach this. With in each file-based directory in the output, we could have subdirectories named by the molecule number, eg under output/processed/examplespmfile/1, we have the cropped image, curvature plot, pixel level statistics for that one molecule. Alternatively, we can also have directories named 'curvature' 'cropped images' etc instead of molecule number based directories.

Describe alternatives you've considered A clear and concise description of any alternative solutions or features you've considered.

Additional context Add any other context or screenshots about the feature request here.

MaxGamill-Sheffield commented 1 year ago

In terms of the single molecule level statistics, I think we came to the conclusion that a JSON file would be best as csv/dataframes wouldn't work well with so many statistics at different levels