update readme.md with new swiss army knife processing order

AFM-SPM / TopoStats

An AFM image analysis program to batch process data and obtain statistics from images

https://afm-spm.github.io/TopoStats/

GNU Lesser General Public License v3.0

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Closed MaxGamill-Sheffield closed 1 week ago

MaxGamill-Sheffield commented 1 week ago

Amends the docs in readme.md, docs/configuration.md, and docs/usage.md in light of the entry-point changes.

Mainly just adjusts to use: `topostats -c .yaml process