AFM-SPM / topostats-training

TopoStats Training Material
https://afm-spm.github.io/topostats-training
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Adds, verbatim the first three episodes of Unix Shell #11

Closed ns-rse closed 7 months ago

ns-rse commented 8 months ago

Copies over verbatim the first three chapters of the [Unix Shell]() software carpentry.

This not the final format. Revisions will be made to trim down, but before hacking at the material I wanted to get everything copied over and in subsequent revisions decide what material to keep.

In copying these files over I have made sure the material renders correctly (initially I missed out all the figures!).

Currently the example data is not included as I figured we would customise this to the sample data that we set up the course to use which currently is undecided (see #12).

github-actions[bot] commented 8 months ago

Thank you!

Thank you for your pull request :smiley:

:robot: This automated message can help you check the rendered files in your submission for clarity. If you have any questions, please feel free to open an issue in {sandpaper}.

If you have files that automatically render output (e.g. R Markdown), then you should check for the following:

Rendered Changes

:mag: Inspect the changes: https://github.com/AFM-SPM/topostats-training/compare/md-outputs..md-outputs-PR-11

The following changes were observed in the rendered markdown documents:

 01-command-line.md (new)                       |  167 +++
 02-filedir.md (new)                            |  818 +++++++++++
 03-create.md (new)                             | 1764 ++++++++++++++++++++++++
 config.yaml                                    |    5 +-
 fig/filesystem-challenge.odg (new)             |  Bin 0 -> 9835 bytes
 fig/filesystem-challenge.svg (new)             |  763 ++++++++++
 fig/filesystem.svg (new)                       |  286 ++++
 fig/find-file-tree.odg (new)                   |  Bin 0 -> 12197 bytes
 fig/find-file-tree.svg (new)                   |  792 +++++++++++
 fig/home-directories.svg (new)                 |  518 +++++++
 fig/homedir.odg (new)                          |  Bin 0 -> 11826 bytes
 fig/nano-screenshot.png (new)                  |  Bin 0 -> 42241 bytes
 fig/redirects-and-pipes.svg (new)              |   71 +
 fig/shell_command_syntax.svg (new)             |   47 +
 fig/shell_script_for_loop_flow_chart.svg (new) |  913 ++++++++++++
 fig/standard-filesystem-hierarchy.svg (new)    | 1534 +++++++++++++++++++++
 introduction.md (gone)                         |  114 --
 md5sum.txt                                     |    8 +-
 reference.md                                   |   69 +-
 19 files changed, 7750 insertions(+), 119 deletions(-)
What does this mean? If you have source files that require output and figures to be generated (e.g. R Markdown), then it is important to make sure the generated figures and output are reproducible. This output provides a way for you to inspect the output in a diff-friendly manner so that it's easy to see the changes that occur due to new software versions or randomisation.

:stopwatch: Updated at 2024-01-19 14:28:44 +0000