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AFM-analysis / afmformats

Python library for reading common AFM file formats
MIT License
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Importing *.h5 file from a ARDFtoHDF5 converter not working in PyJibe #24

Open tenoriomaria opened 2 years ago

tenoriomaria commented 2 years ago

Hi, I am working with Asylum Research AFM and PyJibe. The data I acquire are maps of force-distance curves, which are generated as .ARDF files. I translate these files into .h5 files to be able to read them in PyJibe, but it does not work. This is the error message: "No AFM data files could be found in the location specified" Thanks in advance!

paulmueller commented 2 years ago

Hello, HDF5 files are only supported in the afmformats file format: https://afmformats.readthedocs.io/en/stable/sec_api/afmformats.formats.fmt_hdf5.html#afmformats.formats.fmt_hdf5.load_hdf5

Which means either you convert your data into this structure or you implement a reader and create a pull request for afmformats.