issues
search
AI-sandbox
/
gnomix
A fast, scalable, and accurate local ancestry method.
Other
81
stars
13
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Bash script "download_pretrained_models.sh" doesnt work
#51
lcsfaria
opened
2 months ago
1
unsure if constructed models in GRCh38 are correct
#50
vifehe
opened
3 months ago
0
Merging MSP and VCF variant/ ancestry calling is .0|.1 correct?
#48
pediconeC
opened
7 months ago
0
Error while training
#47
EfraMP
opened
7 months ago
1
Stucking at analysing model performance
#46
bgyuris
opened
10 months ago
2
Pre-Trained Models Calibration Issue
#44
maecorine
opened
1 year ago
1
Can pre-trained models be used on GRCh38 data?
#43
mojoman666
opened
1 year ago
1
error of "struct.error: 'i' format requires -2147483648 <= number <= 2147483647"
#42
buyske
opened
1 year ago
2
Error: Too few founders
#41
LaraArauna
closed
1 year ago
0
Not Non-negative probabilities when training the model from scratch
#40
jikhashkya
opened
1 year ago
2
Error when training model from scratch
#39
oshiomah1
opened
2 years ago
2
Update smoothers
#38
weekend37
closed
2 years ago
0
Modifying train pipeline to be more memory efficient
#37
arvind0422
closed
2 years ago
1
Draft: Import string kernels from package
#36
weekend37
closed
2 years ago
1
updated download script
#35
arvind0422
closed
2 years ago
0
Base model updates
#34
weekend37
closed
2 years ago
1
Pip package, dataset pipe (train, test from 1KG), adding functional tests and updating demo
#33
weekend37
closed
2 years ago
0
Insane memory usage
#32
BEFH
opened
2 years ago
6
Bug fix when using simulated data
#31
arvind0422
closed
2 years ago
0
Duplicated header in vcf output
#30
weekend37
opened
2 years ago
0
Gnofix standalone functionality
#29
imanhamid
opened
2 years ago
2
Confused by implausible results on array data
#28
buyske
closed
1 year ago
5
Versioned releases
#27
BEFH
opened
2 years ago
4
demo.ipynb has a bad script
#25
juanbigotes
closed
2 years ago
2
Issue in training mode : Qt platform plugin xcb
#24
jcgrenier
opened
2 years ago
0
Incorrect window count in training set #2
#23
popgengent
opened
2 years ago
2
Strange results on 23 and me genotype data and pretrained models
#22
enabieva
opened
2 years ago
8
Can't download pre-trained models
#21
jcgrenier
closed
2 years ago
1
Fix column names in write_fb
#20
popgengent
opened
2 years ago
0
Update meta_data_df columns to single strings each
#19
popgengent
opened
2 years ago
0
sorted indices of intersecting snps
#18
weekend37
closed
2 years ago
0
Inquire regarding Phasing Correction and LAI results
#17
guidebortoli
closed
2 years ago
17
Removing genetic map from inference pipeline
#16
arvind0422
closed
2 years ago
0
Gnofix
#15
hnisonoff
closed
2 years ago
3
individual bed files by config flag (beta)
#14
weekend37
closed
2 years ago
0
Fix/issue7
#13
arvind0422
closed
2 years ago
0
Feature Request: Option to output .bed files with contiguous segments for each sample in query file
#12
weekend37
closed
2 years ago
0
Feature Request: Option to subset reference SNPs to query file positions before training
#11
weekend37
opened
2 years ago
1
added package versions to the requirements.txt
#10
roohy
closed
2 years ago
1
AttributeError: 'XGBClassifier' object has no attribute 'enable_categorical'
#9
buyske
closed
2 years ago
2
AttributeError: 'LogisticRegressionBase' object has no attribute 'vectorize'
#8
buyske
closed
2 years ago
2
Preserve header and add ALT allele to query_file_phased.vcf
#7
obedaram
closed
2 years ago
2
PerformanceWarning message
#6
guidebortoli
closed
2 years ago
9
Issue with the requirement.txt
#5
guidebortoli
closed
2 years ago
6
Update sklearn version in requirements.txt
#4
eardil
closed
2 years ago
0
sklearn version for pre-trained model for demo is different than requirements.txt
#3
eardil
closed
3 years ago
1
Incomplete license
#2
mp15
opened
3 years ago
0
Error from predict_proba call
#1
buyske
closed
3 years ago
2