Feat/tsvd-bed-tol - Githubissues

AI-sandbox / neural-admixture

Rapid population clustering with autoencoders

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Closed AlbertDominguez closed 3 years ago

AlbertDominguez commented 3 years ago

Added direct binary PLink file format (BED) compatibility.
Added an early stopping criterion (stops when difference between subsequent objective function value is less than tol, which defaults to 1e-6).
Added TSVD-KMeans initialization method, which should be faster (default is still PC-KMeans).