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AICAN-Research / FAST-Pathology

⚡ Open-source software for deep learning-based digital pathology
BSD 2-Clause "Simplified" License
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Crashed after multi-image inference. #103

Open SahPet opened 3 weeks ago

SahPet commented 3 weeks ago

FastPathology consistently crashed after multi-image inference. All the output files are saved, but it crashes right after this with no visible error print:

WARNING [48032] Test data was NOT found at C:/ProgramData/FAST/data/. Download the test data by running ./downloadTestData or fast.downloadTestDataIfNotExists() in Python.
OK
parsing
OK
Done
Running pipeline [=======================================================================================================================================================================================>  ] 98% | ETA 0.0 minsSaving Tensor data to C:/Users/henri/fastpathology/projects/2024-08-25-153819//results/.../.../heatmap
Writing timestamping..2024-08-25-163905
canceled..
done waiting
stopping pipeline
done
removing renderers..
done
smistad commented 2 weeks ago

When does it crash, after all images have been processed, or during?

andreped commented 2 weeks ago

@smistad, @SahPet Didn't we have this issue on Windows way back when the filename contained a space or misc characters (æ,ø,å)?

I think FP fails to save the final result in the project, if I recall correctly. I still think that is an issue in FP, but probably a year since I last tested this.

See discussion https://github.com/AICAN-Research/FAST-Pathology/discussions/78, @smistad.

SahPet commented 2 weeks ago

Thanks for the response! It crashes right after the last slide is finished. Might be a special characters problem, I haven't gotten chance to test that yet (with and without special characters in the filename), but I can test it.