search

AICAN-Research / FAST-Pathology

⚡ Open-source software for deep learning-based digital pathology
BSD 2-Clause "Simplified" License
122 stars 26 forks source link

macOS bug #50

Closed andreped closed 2 years ago

andreped commented 2 years ago

Just tried installing FP and testing it on a new macOS with Intel CPU, and for whatever reason it failed.

The machine did not have homebrew or anything like that. Hence, I set that up, but after following this instruction for installation. I got the following below:

dyld[68800]: Library not loaded: '/usr/local/opt/jpeg/lib/libjpeg.9.dylib'
Referenced from: '/Users/sigridberg/Downloads/fastpathology_macos10.13_1.0.1/lib/libFAST.4.4.0.dylib'
Reason: tried: '/usr/local/opt/jpeg/lib/libjpeg.9.dylib' (no such file), '/usr/local/lib/libjpeg.9.dylib' (no such file), '/usr/lib/libjpeg.9.dylib' (no such file)

If I tried to install libjpeg myself through brew install libjpeg FP launches, but when trying to load a simple WSI it fails and complains about mismatch in libjpeg version and what FP/FAST expects.

Have anyone observed the same?

smistad commented 2 years ago

Homebrew sometimes updates packages. Then you will get a mismatch between the library it was compiled with and the library downloaded by the user. Homebrew allows installing a specific version, but they don't seem to always keep previous versions lying around. The best fix for this is to bundle all libraries needed with the installer,

andreped commented 2 years ago

Aaah, that makes sense. Yeah, then the best solution would be to bundle all deps with the installer.

I have already made a separate issue on that: https://github.com/AICAN-Research/FAST-Pathology/issues/51

I can make an attempt on the installer later today or during the weekend.