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AIH-SGML / mixmil

Code for the paper: Mixed Models with Multiple Instance Learning
https://arxiv.org/abs/2311.02455
Apache License 2.0
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Sharing of single-cell pre-trained embeddings #10

Closed ChengHsiuChi closed 1 month ago

ChengHsiuChi commented 2 months ago

Hi, thank you again for the previous explanation and this great work.

I have been through your paper, and I am interested in implementing the model on BBBC021 dataset. Would it be possible to share the obtained single-cell representations?

That would be really appreciated :)!

Best regards, Hsiuchi

allepalma commented 1 month ago

Hi @ChengHsiuChi,

Thank you again for your interest in our work. Please, find the featurized images at the following link:

https://drive.google.com/file/d/1LEW74HUaJ2BMlPMmUlYMrsCFTmbpR2Rd/view?usp=drive_link

The features are saved as an AnnData object (https://anndata.readthedocs.io/en/latest/) which you can read and inspect using the Scanpy package (https://scanpy.readthedocs.io/en/stable/).

Let us know if we can help you any further!