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AIM-Harvard / SlicerRadiomics

A Slicer extension to provide a GUI around pyradiomics
BSD 3-Clause "New" or "Revised" License
101 stars 47 forks source link

How to use SLicerRadiomics #47

Closed durgeshkdwivedi closed 5 years ago

durgeshkdwivedi commented 5 years ago

Hello, I'm a beginner at pyRadiomics. I've installed radiomics module in the slicer. The steps I used for the feature extraction:

Imported the 2D Dicom image (one slice) for the test. Drew an ROI on the tumor (label) Open the module Radiomics in the slicer. Select All features, apply Export as a table. 118 features were extracted.

Am I doing it correctly? If the above method is wrong, can anyone guide me through this? Also, is there any way to export the table from the slicer as a CSV file? I would really appreciate the help!

Thanks, Durgesh

pieper commented 5 years ago

Yes, that sounds correct - see the PyRadiomics documentation for more info on the config settings:

https://pyradiomics.readthedocs.io/en/latest/index.html

Also, is there any way to export the table from the slicer as a CSV file?

Yes, just do File->Save and pick the table or you can copy-paste from the table in Slicer.