AIM-Harvard / foundation-cancer-image-biomarker

Code and evaluation repository for the paper
https://aim-harvard.github.io/foundation-cancer-image-biomarker/
MIT License
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:arrow_up: Bump rapidfuzz from 2.15.1 to 3.4.0 #256

Closed dependabot[bot] closed 11 months ago

dependabot[bot] commented 11 months ago

Bumps rapidfuzz from 2.15.1 to 3.4.0.

Release notes

Sourced from rapidfuzz's releases.

Release 3.4.0

Changed

  • upgrade to Cython==3.0.3
  • add simd implementation for Jaro and Jaro Winkler

Release 3.3.1

Added

  • add missing tag for python 3.12 support

Release 3.3.0

Changed

  • upgrade to Cython==3.0.2
  • implement the remaining missing features from the C++ implementation in the pure Python implementation

Added

  • added support for Python 3.12

Release 3.2.0

Changed

  • build x86 with sse2/avx2 runtime detection

Release 3.1.2

Changed

  • upgrade to Cython==3.0.0

Release 3.1.1

Changed

  • upgrade to taskflow==3.6

Fixed

  • replace usage of isnan with std::isnan which fixes the build on NetBSD

Release 3.1.0

Changed

  • added keyword argument pad to Hamming distance. This controls whether sequences of different length should be padded or lead to a ValueError
  • improve consistency of exception messages between the C++ and pure Python implementation
  • upgrade required Cython version to Cython==3.0.0b3

Fixed

  • fix missing GIL restore when an exception is thrown inside process.cdist
  • fix incorrect type hints for the process module

Release 3.0.0

Changed

  • allow the usage of Hamming for different string lengths. Length differences are handled as insertions / deletions
  • remove support for boolean preprocessor functions in rapidfuzz.fuzz and rapidfuzz.process. The processor argument is now always a callable or None.
  • update defaults of the processor argument to be None everywhere. For affected functions this can change results, since strings are no longer preprocessed. To get back the old behaviour pass processor=utils.default_process to these functions. The following functions are affected by this:

... (truncated)

Changelog

Sourced from rapidfuzz's changelog.

Changelog

[3.5.0] - 2023-10-31 ^^^^^^^^^^^^^^^^^^^^ Changed

* skip pandas ``pd.NA`` similar to ``None``
* add ``score_multiplier`` argument to ``process.cdist`` which allows multiplying the end result scores
  with a constant factor.
* drop support for Python 3.7

Performance

  • improve performance of simd implementation for LCS / Indel / Jaro / JaroWinkler
  • improve performance of Jaro and Jaro Winkler for long sequences
  • implement process.extract with limit=1 using process.extractOne which can be faster

Fixed

* the preprocessing function was always called through Python due to a broken C-API version check
* fix wraparound issue in simd implementation of Jaro and Jaro Winkler

[3.4.0] - 2023-10-09 ^^^^^^^^^^^^^^^^^^^^ Changed

  • upgrade to Cython==3.0.3
  • add simd implementation for Jaro and Jaro Winkler

[3.3.1] - 2023-09-25 ^^^^^^^^^^^^^^^^^^^^ Added

* add missing tag for python 3.12 support

[3.3.0] - 2023-09-11 ^^^^^^^^^^^^^^^^^^^^ Changed

  • upgrade to Cython==3.0.2
  • implement the remaining missing features from the C++ implementation in the pure Python implementation

Added

* added support for Python 3.12

[3.2.0] - 2023-08-02 ^^^^^^^^^^^^^^^^^^^^ Changed </tr></table>

... (truncated)

Commits
  • 1ccb012 fix type deduction
  • 49207be upgrade rapidfuzz-cpp
  • 6269c13 fix edge case in simd implementation of Jaro/JaroWinkler
  • c40fe92 add release date
  • c703f2f increase required rapidfuzz-cpp version
  • c973665 fix edge case in jaro simd implementation
  • f0dbacf upgrade cython
  • 67a0933 add simd implementation of Jaro and JaroWinkler
  • 10efe27 add missing tag for python 3.12 support
  • b7c5908 release 3.3.0
  • Additional commits viewable in compare view


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dependabot[bot] commented 11 months ago

Superseded by #259.