search

AIM-Harvard / foundation-cancer-image-biomarker

Code and evaluation repository for the paper
https://aim-harvard.github.io/foundation-cancer-image-biomarker/
MIT License
75 stars 9 forks source link

:arrow_up: Bump monai-weekly from 1.3.dev2338 to 1.4.dev2346 #278

Closed dependabot[bot] closed 10 months ago

dependabot[bot] commented 10 months ago

Bumps monai-weekly from 1.3.dev2338 to 1.4.dev2346.

Release notes

Sourced from monai-weekly's releases.

1.3.0

Added

  • Intensity transforms ScaleIntensityFixedMean and RandScaleIntensityFixedMean (#6542)
  • UltrasoundConfidenceMapTransform used for computing confidence map from an ultrasound image (#6709)
  • channel_wise support in RandScaleIntensity and RandShiftIntensity (#6793, #7025)
  • RandSimulateLowResolution and RandSimulateLowResolutiond (#6806)
  • SignalFillEmptyd (#7011)
  • Euclidean distance transform DistanceTransformEDT with GPU support (#6981)
  • Port loss and metrics from monai-generative (#6729, #6836)
  • Support invert_image and retain_stats in AdjustContrast and RandAdjustContrast (#6542)
  • New network DAF3D and Quicknat (#6306)
  • Support sincos position embedding (#6986)
  • ZarrAvgMerger used for patch inference (#6633)
  • Dataset tracking support to MLFlowHandler (#6616)
  • Considering spacing and subvoxel borders in SurfaceDiceMetric (#6681)
  • CUCIM support for surface-related metrics (#7008)
  • loss_fn support in IgniteMetric and renamed it to IgniteMetricHandler (#6695)
  • CallableEventWithFilter and Events options for trigger_event in GarbageCollector (#6663)
  • Support random sorting option to GridPatch, RandGridPatch, GridPatchd and RandGridPatchd (#6701)
  • Support multi-threaded batch sampling in PatchInferer (#6139)
  • SoftclDiceLoss and SoftDiceclDiceLoss (#6763)
  • HausdorffDTLoss and LogHausdorffDTLoss (#6994)
  • Documentation for TensorFloat-32 (#6770)
  • Docstring format guide (#6780)
  • GDSDataset support for GDS (#6778)
  • PyTorch backend support for MapLabelValue (#6872)
  • filter_func in copy_model_state to filter the weights to be loaded and filter_swinunetr (#6917)
  • stats_sender to MonaiAlgo for FL stats (#6984)
  • freeze_layers to help freeze specific layers (#6970)

misc.

  • Refactor multi-node running command used in Auto3DSeg into dedicated functions (#6623)
  • Support str type annotation to device in ToTensorD (#6737)
  • Improve logging message and file name extenstion in DataAnalyzer for Auto3DSeg (#6758)
  • Set data_range as a property in SSIMLoss (#6788)
  • Unify environment variable access (#7084)
  • end_lr support in WarmupCosineSchedule (#6662)
  • Add ClearML as optional dependency (#6827)
  • yandex.disk support in download_url (#6667)
  • Improve config expression error message (#6977)

Fixed

transforms

  • Make convert_box_to_mask throw errors when box size larger than the image (#6637)
  • Fix lazy mode in RandAffine (#6774)
  • Raise ValueError when map_items is bool in Compose (#6882)
  • Improve performance for NormalizeIntensity (#6887)
  • Fix mismatched shape in Spacing (#6912)
  • Avoid FutureWarning in CropForeground (#6934)
  • Fix Lazy=True ignored when using Dataset call (#6975)
  • Shape check for arbitrary types for DataStats (#7082)

data

... (truncated)

Commits


Dependabot compatibility score

Dependabot will resolve any conflicts with this PR as long as you don't alter it yourself. You can also trigger a rebase manually by commenting @dependabot rebase.

Dependabot commands and options
You can trigger Dependabot actions by commenting on this PR: - `@dependabot rebase` will rebase this PR - `@dependabot recreate` will recreate this PR, overwriting any edits that have been made to it - `@dependabot merge` will merge this PR after your CI passes on it - `@dependabot squash and merge` will squash and merge this PR after your CI passes on it - `@dependabot cancel merge` will cancel a previously requested merge and block automerging - `@dependabot reopen` will reopen this PR if it is closed - `@dependabot close` will close this PR and stop Dependabot recreating it. You can achieve the same result by closing it manually - `@dependabot show ignore conditions` will show all of the ignore conditions of the specified dependency - `@dependabot ignore this major version` will close this PR and stop Dependabot creating any more for this major version (unless you reopen the PR or upgrade to it yourself) - `@dependabot ignore this minor version` will close this PR and stop Dependabot creating any more for this minor version (unless you reopen the PR or upgrade to it yourself) - `@dependabot ignore this dependency` will close this PR and stop Dependabot creating any more for this dependency (unless you reopen the PR or upgrade to it yourself)
dependabot[bot] commented 10 months ago

OK, I won't notify you again about this release, but will get in touch when a new version is available. If you'd rather skip all updates until the next major or minor version, let me know by commenting @dependabot ignore this major version or @dependabot ignore this minor version.

If you change your mind, just re-open this PR and I'll resolve any conflicts on it.