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AIM-Harvard / pyradiomics

Open-source python package for the extraction of Radiomics features from 2D and 3D images and binary masks. Support: https://discourse.slicer.org/c/community/radiomics
http://pyradiomics.readthedocs.io/
BSD 3-Clause "New" or "Revised" License
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How to image preprocess the MR sequence medical image? #509

Closed destinybuilt closed 5 years ago

destinybuilt commented 5 years ago

Can pyradiomics implement image preprocessing for MR? And is there a literature on the basis for the introduction of image preprocessing and the preprocessing method?

fedorov commented 5 years ago

There are various options you can change to control preprocessing of the image prior to feature extraction, such as normalization, which are documented here: https://pyradiomics.readthedocs.io/en/latest/customization.html#settings.

You can see an example parameter file for MR images here: https://github.com/Radiomics/pyradiomics/tree/master/examples/exampleSettings.

One introductory resource for image processing you can consider is the ITK guide: https://itk.org/ITKSoftwareGuide/html/.