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AIM-Harvard / pyradiomics

Open-source python package for the extraction of Radiomics features from 2D and 3D images and binary masks. Support: https://discourse.slicer.org/c/community/radiomics
http://pyradiomics.readthedocs.io/
BSD 3-Clause "New" or "Revised" License
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Feature maps with MRI sequence in the background #793

Open asmaharry opened 1 year ago

asmaharry commented 1 year ago

Hello,

When we create a feature map of any pyradiomics features, it only gives us the cropped image (equivalent to the mask). If I want to show the feature map in the foreground and the MRI sequence in the background, is it possible in pyradiomics?

Here an example image is uploaded (The top image shows the original image T2 overlaid with the Whole tumor and at the bottom, it shows the feature map of one of GLSZM feature map in the foreground and T2 is in the background) Many thanks. FM

JoostJM commented 1 year ago

The output format is NRRD, which contains geometric information. Therefore, the featuremap can be projected over the original image. This is not implemented in PyRadiomics, as it does not deal with visualization. 3D Slicer is able to do this.