[FEAT EXTRACTION] - Githubissues

AIM-Harvard / pyradiomics

Open-source python package for the extraction of Radiomics features from 2D and 3D images and binary masks. Support: https://discourse.slicer.org/c/community/radiomics

http://pyradiomics.readthedocs.io/

BSD 3-Clause "New" or "Revised" License

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[FEAT EXTRACTION] #818

Closed nimayousefi75 closed 1 year ago

nimayousefi75 commented 1 year ago

Hello, I'm going to extract features from lungs(thoracic cavity) my question is how can i specify this area and extract features with pyradiomics?

OS: 10
Python version: 3.9
PyRadiomics version :3.1

dorkylever commented 1 year ago

Hi Nima,

Pyradiomics is only available for python 3.7 or lower.

Addtionally, you will need to create a mask of the thoracic cavity (there's many tools - 3DSlicer, ITK-SNAP [maybe Dirshti paint - would be my last choice]). Then specify that mask in your run.

If you're doing it at low throughput I would recommend using the command line tools.

nimayousefi75 commented 1 year ago

Thank you for your reply.