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AIM-Harvard / pyradiomics

Open-source python package for the extraction of Radiomics features from 2D and 3D images and binary masks. Support: https://discourse.slicer.org/c/community/radiomics
http://pyradiomics.readthedocs.io/
BSD 3-Clause "New" or "Revised" License
1.15k stars 494 forks source link

[BUG] #864

Open Zhack47 opened 9 months ago

Zhack47 commented 9 months ago

Describe the bug Package trimesh is missing for LBP3D image filtering.

PyRadiomics configuration I used enableAllImages() on the RadiomicsFeatureExtractor.

Apart from that, default configuration

To Reproduce

Here's a reproducible snippet

import SimpleITK
from radiomics import featureextractor

extractor = featureextractor.RadiomicsFeatureExtractor()

extractor.enableAllFeatures()
extractor.enableAllImageTypes()

image = SimpleITK.ReadImage("path/to/image")
mask = SimpleITK.ReadImage("path/to/mask")
feature_vector_t = extractor.execute(image, mask)

This was apparently also a problem with the Docker version (#389 ) but was not fixed at a global level.

Maybe updating the requirements.txt will work ?