Open-source python package for the extraction of Radiomics features from 2D and 3D images and binary masks. Support: https://discourse.slicer.org/c/community/radiomics
Describe the bug
Dear Experts,
I am trying run feature extraction from HCC CT images. However, executing pyradiomics "path\to\image.nii" "path\to\mask.nrrd" --out-dir "path\to\Radiomics" --mode voxel --log-file path\to\run_21.6.24.txt fails with a MemoryError.
To Reproduce
Steps to reproduce the behavior:
pyradiomics "path\to\image.nii" "path\to\mask.nrrd" --out-dir "path\to\Radiomics" --mode voxel --log-file path\to\run_21.6.24.txt
Version:
OS: Windows 11, 64-bit, 23H2
Python version: 3.11.7
PyRadiomics version: 3.0.1a1
Additional context
Please guide to address this error.
Please advice whether the used syntax and arguments are optimal for feature extraction from CT scan.
Is there a way to save the resampled image and mask as well as LoG and wavelet transformed images?
Describe the bug Dear Experts, I am trying run feature extraction from HCC CT images. However, executing
pyradiomics "path\to\image.nii" "path\to\mask.nrrd" --out-dir "path\to\Radiomics" --mode voxel --log-file path\to\run_21.6.24.txtfails with a MemoryError.PyRadiomics configuration Pyradiomics_Params.txt
PyRadiomics log file run_21.6.24.txt
To Reproduce Steps to reproduce the behavior: pyradiomics "path\to\image.nii" "path\to\mask.nrrd" --out-dir "path\to\Radiomics" --mode voxel --log-file path\to\run_21.6.24.txt
Version:
Additional context Please guide to address this error. Please advice whether the used syntax and arguments are optimal for feature extraction from CT scan. Is there a way to save the resampled image and mask as well as LoG and wavelet transformed images?