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AJResearchGroup / nsphs_ml_qt

R package for nsphs_ml_qt
GNU General Public License v3.0
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[RUNNING] Filter out M and p models that do not work #45

Closed richelbilderbeek closed 2 years ago

richelbilderbeek commented 2 years ago

In #42 it was discovered that not all models work. Filter those out.

Spoiler: use M1 and p1

richelbilderbeek commented 2 years ago 
richel@N141CU:~/GitHubs/nsphs_ml_qt/scripts_local$ singularity run ../nsphs_ml_qt.sif Rscript issue_45.R 
'nsphs_ml_qt.sif' running with arguments 'Rscript issue_45.R'
M0 p0 TRUE
^C
Execution halted
richelbilderbeek commented 2 years ago

Running on Rackham:

[richel@rackham2 ~]$ sbatch nsphs_ml_qt/scripts_rackham/02_start_issue_45.sh 
Submitted batch job 27415696
richelbilderbeek commented 2 years ago 
[richel@rackham2 ~]$ ./nsphs_ml_qt/scripts_bianca/91_poll_jobs.sh 
             JOBID PARTITION     NAME     USER ST       TIME  NODES NODELIST(REASON)
          27415696      core 02_start   richel PD       0:00      1 (Priority)
richelbilderbeek commented 2 years ago

Hmm, 1 out of 132 combinations works ...?

[richel@rackham3 ~]$ cat 02_start_issue_45.log 
Starting time: 2022-05-17T12:00:14+0200
Running on computer with HOSTNAME: r127
Running at location /home/richel
'nsphs_ml_qt.sif' running with arguments 'Rscript nsphs_ml_qt/scripts_local/issue_45.R'
Tue May 17 12:03:06 2022 M0 p0 TRUE
Tue May 17 12:04:15 2022 M0 p1 FALSE
Tue May 17 12:05:22 2022 M0 p2 FALSE
Tue May 17 12:05:46 2022 M0_1n p0 FALSE
Tue May 17 12:06:12 2022 M0_1n p1 FALSE
Tue May 17 12:06:37 2022 M0_1n p2 FALSE
Tue May 17 12:07:02 2022 M0_2n p0 FALSE
Tue May 17 12:07:27 2022 M0_2n p1 FALSE
Tue May 17 12:07:53 2022 M0_2n p2 FALSE
Tue May 17 12:08:17 2022 M0_3n p0 FALSE
Tue May 17 12:08:42 2022 M0_3n p1 FALSE
Tue May 17 12:09:07 2022 M0_3n p2 FALSE
Tue May 17 12:09:31 2022 M0_4n p0 FALSE
Tue May 17 12:09:56 2022 M0_4n p1 FALSE
Tue May 17 12:10:21 2022 M0_4n p2 FALSE
Tue May 17 12:10:46 2022 M0_5n p0 FALSE
Tue May 17 12:11:11 2022 M0_5n p1 FALSE
Tue May 17 12:11:35 2022 M0_5n p2 FALSE
Tue May 17 12:13:10 2022 M1 p0 FALSE
Tue May 17 12:14:45 2022 M1 p1 FALSE
Tue May 17 12:16:18 2022 M1 p2 FALSE
Tue May 17 12:16:42 2022 M1_1n p0 FALSE
Tue May 17 12:17:07 2022 M1_1n p1 FALSE
Tue May 17 12:17:32 2022 M1_1n p2 FALSE
Tue May 17 12:17:56 2022 M1_2n p0 FALSE
Tue May 17 12:18:21 2022 M1_2n p1 FALSE
Tue May 17 12:18:46 2022 M1_2n p2 FALSE
Tue May 17 12:19:10 2022 M1_3n p0 FALSE
Tue May 17 12:19:35 2022 M1_3n p1 FALSE
Tue May 17 12:20:00 2022 M1_3n p2 FALSE
Tue May 17 12:20:24 2022 M1_4n p0 FALSE
Tue May 17 12:20:49 2022 M1_4n p1 FALSE
Tue May 17 12:21:14 2022 M1_4n p2 FALSE
Tue May 17 12:21:39 2022 M1_5n p0 FALSE
Tue May 17 12:22:04 2022 M1_5n p1 FALSE
Tue May 17 12:22:28 2022 M1_5n p2 FALSE
Tue May 17 12:25:12 2022 M3d p0 FALSE
Tue May 17 12:27:56 2022 M3d p1 FALSE
Tue May 17 12:30:40 2022 M3d p2 FALSE
Tue May 17 12:31:06 2022 M3d_1n p0 FALSE
Tue May 17 12:31:30 2022 M3d_1n p1 FALSE
Tue May 17 12:31:54 2022 M3d_1n p2 FALSE
Tue May 17 12:32:20 2022 M3d_2n p0 FALSE
Tue May 17 12:32:44 2022 M3d_2n p1 FALSE
Tue May 17 12:33:08 2022 M3d_2n p2 FALSE
Tue May 17 12:33:33 2022 M3d_3n p0 FALSE
Tue May 17 12:33:58 2022 M3d_3n p1 FALSE
Tue May 17 12:34:21 2022 M3d_3n p2 FALSE
Tue May 17 12:34:48 2022 M3d_4n p0 FALSE
Tue May 17 12:35:12 2022 M3d_4n p1 FALSE
Tue May 17 12:35:36 2022 M3d_4n p2 FALSE
Tue May 17 12:36:02 2022 M3d_5n p0 FALSE
Tue May 17 12:36:26 2022 M3d_5n p1 FALSE
Tue May 17 12:36:49 2022 M3d_5n p2 FALSE
Tue May 17 12:39:35 2022 M3e p0 FALSE
Tue May 17 12:42:21 2022 M3e p1 FALSE
Tue May 17 12:45:09 2022 M3e p2 FALSE
Tue May 17 12:45:35 2022 M3e_1n p0 FALSE
Tue May 17 12:45:59 2022 M3e_1n p1 FALSE
Tue May 17 12:46:23 2022 M3e_1n p2 FALSE
Tue May 17 12:46:50 2022 M3e_2n p0 FALSE
Tue May 17 12:47:14 2022 M3e_2n p1 FALSE
Tue May 17 12:47:39 2022 M3e_2n p2 FALSE
Tue May 17 12:48:05 2022 M3e_3n p0 FALSE
Tue May 17 12:48:29 2022 M3e_3n p1 FALSE
Tue May 17 12:48:53 2022 M3e_3n p2 FALSE
Tue May 17 12:49:19 2022 M3e_4n p0 FALSE
Tue May 17 12:49:43 2022 M3e_4n p1 FALSE
Tue May 17 12:50:08 2022 M3e_4n p2 FALSE
Tue May 17 12:50:34 2022 M3e_5n p0 FALSE
Tue May 17 12:50:58 2022 M3e_5n p1 FALSE
Tue May 17 12:51:23 2022 M3e_5n p2 FALSE
Tue May 17 12:54:23 2022 M3f p0 FALSE
Tue May 17 12:57:26 2022 M3f p1 FALSE
Tue May 17 13:00:27 2022 M3f p2 FALSE
Tue May 17 13:00:53 2022 M3f_1n p0 FALSE
Tue May 17 13:01:17 2022 M3f_1n p1 FALSE
Tue May 17 13:01:41 2022 M3f_1n p2 FALSE
Tue May 17 13:02:07 2022 M3f_2n p0 FALSE
Tue May 17 13:02:32 2022 M3f_2n p1 FALSE
Tue May 17 13:02:56 2022 M3f_2n p2 FALSE
Tue May 17 13:03:22 2022 M3f_3n p0 FALSE
Tue May 17 13:03:46 2022 M3f_3n p1 FALSE
Tue May 17 13:04:10 2022 M3f_3n p2 FALSE
Tue May 17 13:04:37 2022 M3f_4n p0 FALSE
Tue May 17 13:05:01 2022 M3f_4n p1 FALSE
Tue May 17 13:05:25 2022 M3f_4n p2 FALSE
Tue May 17 13:05:52 2022 M3f_5n p0 FALSE
Tue May 17 13:06:16 2022 M3f_5n p1 FALSE
Tue May 17 13:06:41 2022 M3f_5n p2 FALSE
Tue May 17 13:07:08 2022 M3j10U p0 FALSE
Tue May 17 13:07:32 2022 M3j10U p1 FALSE
Tue May 17 13:07:56 2022 M3j10U p2 FALSE
Tue May 17 13:08:23 2022 M3j10U_1n p0 FALSE
Tue May 17 13:08:47 2022 M3j10U_1n p1 FALSE
Tue May 17 13:09:12 2022 M3j10U_1n p2 FALSE
Tue May 17 13:09:38 2022 M3j10U_2n p0 FALSE
Tue May 17 13:10:02 2022 M3j10U_2n p1 FALSE
Tue May 17 13:10:28 2022 M3j10U_2n p2 FALSE
Tue May 17 13:10:53 2022 M3j10U_3n p0 FALSE
Tue May 17 13:11:17 2022 M3j10U_3n p1 FALSE
Tue May 17 13:11:43 2022 M3j10U_3n p2 FALSE
Tue May 17 13:12:09 2022 M3j10U_4n p0 FALSE
Tue May 17 13:12:33 2022 M3j10U_4n p1 FALSE
Tue May 17 13:12:58 2022 M3j10U_4n p2 FALSE
Tue May 17 13:13:23 2022 M3j10U_5n p0 FALSE
Tue May 17 13:13:48 2022 M3j10U_5n p1 FALSE
Tue May 17 13:14:12 2022 M3j10U_5n p2 FALSE
Tue May 17 13:14:38 2022 M3j10X p0 FALSE
Tue May 17 13:15:02 2022 M3j10X p1 FALSE
Tue May 17 13:15:27 2022 M3j10X p2 FALSE
Tue May 17 13:15:52 2022 M3j10X_1n p0 FALSE
Tue May 17 13:16:17 2022 M3j10X_1n p1 FALSE
Tue May 17 13:16:41 2022 M3j10X_1n p2 FALSE
Tue May 17 13:17:06 2022 M3j10X_2n p0 FALSE
Tue May 17 13:17:31 2022 M3j10X_2n p1 FALSE
Tue May 17 13:17:55 2022 M3j10X_2n p2 FALSE
Tue May 17 13:18:20 2022 M3j10X_3n p0 FALSE
Tue May 17 13:18:45 2022 M3j10X_3n p1 FALSE
Tue May 17 13:19:09 2022 M3j10X_3n p2 FALSE
Tue May 17 13:19:33 2022 M3j10X_4n p0 FALSE
Tue May 17 13:19:58 2022 M3j10X_4n p1 FALSE
Tue May 17 13:20:22 2022 M3j10X_4n p2 FALSE
Tue May 17 13:20:48 2022 M3j10X_5n p0 FALSE
Tue May 17 13:21:12 2022 M3j10X_5n p1 FALSE
Tue May 17 13:21:37 2022 M3j10X_5n p2 FALSE
There were 50 or more warnings (use warnings() to see the first 50)
End time: 2022-05-17T13:21:37+0200
Duration: 4883 seconds
[richel@rackham3 ~]$ cat 02_start_issue_45.log  | wc
    133    1046    5501
[richel@rackham3 ~]$ cat 02_start_issue_45.log  | egrep TRUE
Tue May 17 12:03:06 2022 M0 p0 TRUE
richelbilderbeek commented 2 years ago

Use M1 and p1, see #42 for rationale