i downloaded the allbiotc2 using git. When i try with make install, it gives below errors. Can you please help me to install this software
ls: cannot access _1.fastq: No such file or directory
ls: cannot access _1.fastq: No such file or directory
ls: cannot access _1.fastq: No such file or directory
ls: cannot access _2.fastq: No such file or directory
Install python packages for the pipeline
Reading package lists...
Building dependency tree...
Reading state information...
python-biopython is already the newest version.
0 upgraded, 0 newly installed, 0 to remove and 16 not upgraded.
ls: cannot access _1.fastq: No such file or directory
ls: cannot access _1.fastq: No such file or directory
ls: cannot access _1.fastq: No such file or directory
ls: cannot access _2.fastq: No such file or directory
ls: cannot access _1.fastq: No such file or directory
ls: cannot access _1.fastq: No such file or directory
ls: cannot access _1.fastq: No such file or directory
ls: cannot access _2.fastq: No such file or directory
ls: cannot access _1.fastq: No such file or directory
ls: cannot access _1.fastq: No such file or directory
ls: cannot access _1.fastq: No such file or directory
ls: cannot access _2.fastq: No such file or directory
ls: cannot access _1.fastq: No such file or directory
ls: cannot access _1.fastq: No such file or directory
ls: cannot access _1.fastq: No such file or directory
ls: cannot access _2.fastq: No such file or directory
/home/sukesh/allbiotc2/pindel/Makefile:91: warning: overriding commands for target install' /home/sukesh/allbiotc2/breakdancer/Makefile:57: warning: ignoring old commands for targetinstall'
ls: cannot access _1.fastq: No such file or directory
ls: cannot access _1.fastq: No such file or directory
ls: cannot access _1.fastq: No such file or directory
ls: cannot access _2.fastq: No such file or directory
/home/sukesh/allbiotc2/clever/Makefile:62: warning: overriding commands for target install' /home/sukesh/allbiotc2/pindel/Makefile:91: warning: ignoring old commands for targetinstall'
ls: cannot access _1.fastq: No such file or directory
ls: cannot access _1.fastq: No such file or directory
ls: cannot access _1.fastq: No such file or directory
ls: cannot access _2.fastq: No such file or directory
Reading package lists...
Building dependency tree...
Reading state information...
libboost-all-dev is already the newest version.
0 upgraded, 0 newly installed, 0 to remove and 16 not upgraded.
sudo: pip: command not found
make[1]: [install] Error 1
make: [install] Error 2
Dear Sir,
i downloaded the allbiotc2 using git. When i try with make install, it gives below errors. Can you please help me to install this software
ls: cannot access _1.fastq: No such file or directory ls: cannot access _1.fastq: No such file or directory ls: cannot access _1.fastq: No such file or directory ls: cannot access _2.fastq: No such file or directory Install python packages for the pipeline Reading package lists... Building dependency tree... Reading state information... python-biopython is already the newest version. 0 upgraded, 0 newly installed, 0 to remove and 16 not upgraded. ls: cannot access _1.fastq: No such file or directory ls: cannot access _1.fastq: No such file or directory ls: cannot access _1.fastq: No such file or directory ls: cannot access _2.fastq: No such file or directory ls: cannot access _1.fastq: No such file or directory ls: cannot access _1.fastq: No such file or directory ls: cannot access _1.fastq: No such file or directory ls: cannot access _2.fastq: No such file or directory ls: cannot access _1.fastq: No such file or directory ls: cannot access _1.fastq: No such file or directory ls: cannot access _1.fastq: No such file or directory ls: cannot access _2.fastq: No such file or directory ls: cannot access _1.fastq: No such file or directory ls: cannot access _1.fastq: No such file or directory ls: cannot access _1.fastq: No such file or directory ls: cannot access _2.fastq: No such file or directory /home/sukesh/allbiotc2/pindel/Makefile:91: warning: overriding commands for target
install' /home/sukesh/allbiotc2/breakdancer/Makefile:57: warning: ignoring old commands for target
install' ls: cannot access _1.fastq: No such file or directory ls: cannot access _1.fastq: No such file or directory ls: cannot access _1.fastq: No such file or directory ls: cannot access _2.fastq: No such file or directory /home/sukesh/allbiotc2/clever/Makefile:62: warning: overriding commands for targetinstall' /home/sukesh/allbiotc2/pindel/Makefile:91: warning: ignoring old commands for target
install' ls: cannot access _1.fastq: No such file or directory ls: cannot access _1.fastq: No such file or directory ls: cannot access _1.fastq: No such file or directory ls: cannot access _2.fastq: No such file or directory Reading package lists... Building dependency tree... Reading state information... libboost-all-dev is already the newest version. 0 upgraded, 0 newly installed, 0 to remove and 16 not upgraded. sudo: pip: command not found make[1]: [install] Error 1 make: [install] Error 2Thanks Sukesh