ALLBio / allbiotc2

Benchmark pipeline for Structural Variation analyses, funded by the ALLBio.
http://www.allbioinformatics.eu/doku.php?id=start
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Issue installing allbiotc2 #8

Open sukesh14 opened 7 years ago

sukesh14 commented 7 years ago

Dear Sir,

i downloaded the allbiotc2 using git. When i try with make install, it gives below errors. Can you please help me to install this software

ls: cannot access _1.fastq: No such file or directory ls: cannot access _1.fastq: No such file or directory ls: cannot access _1.fastq: No such file or directory ls: cannot access _2.fastq: No such file or directory Install python packages for the pipeline Reading package lists... Building dependency tree... Reading state information... python-biopython is already the newest version. 0 upgraded, 0 newly installed, 0 to remove and 16 not upgraded. ls: cannot access _1.fastq: No such file or directory ls: cannot access _1.fastq: No such file or directory ls: cannot access _1.fastq: No such file or directory ls: cannot access _2.fastq: No such file or directory ls: cannot access _1.fastq: No such file or directory ls: cannot access _1.fastq: No such file or directory ls: cannot access _1.fastq: No such file or directory ls: cannot access _2.fastq: No such file or directory ls: cannot access _1.fastq: No such file or directory ls: cannot access _1.fastq: No such file or directory ls: cannot access _1.fastq: No such file or directory ls: cannot access _2.fastq: No such file or directory ls: cannot access _1.fastq: No such file or directory ls: cannot access _1.fastq: No such file or directory ls: cannot access _1.fastq: No such file or directory ls: cannot access _2.fastq: No such file or directory /home/sukesh/allbiotc2/pindel/Makefile:91: warning: overriding commands for target install' /home/sukesh/allbiotc2/breakdancer/Makefile:57: warning: ignoring old commands for targetinstall' ls: cannot access _1.fastq: No such file or directory ls: cannot access _1.fastq: No such file or directory ls: cannot access _1.fastq: No such file or directory ls: cannot access _2.fastq: No such file or directory /home/sukesh/allbiotc2/clever/Makefile:62: warning: overriding commands for target install' /home/sukesh/allbiotc2/pindel/Makefile:91: warning: ignoring old commands for targetinstall' ls: cannot access _1.fastq: No such file or directory ls: cannot access _1.fastq: No such file or directory ls: cannot access _1.fastq: No such file or directory ls: cannot access _2.fastq: No such file or directory Reading package lists... Building dependency tree... Reading state information... libboost-all-dev is already the newest version. 0 upgraded, 0 newly installed, 0 to remove and 16 not upgraded. sudo: pip: command not found make[1]: [install] Error 1 make: [install] Error 2

Thanks Sukesh